Click here to switch to the map view.

The map label for this gene is lpfD

Identifier: 218697451

GI number: 218697451

Start: 4286850

End: 4287923

Strand: Reverse

Name: lpfD

Synonym: EC55989_4200

Alternate gene names: 218697451

Gene position: 4287923-4286850 (Counterclockwise)

Preceding gene: 218697452

Following gene: 218697450

Centisome position: 83.18

GC content: 39.39

Gene sequence:

>1074_bases
ATGAACAAGTATATCAAACAGTGGTGCTTTGCTGTGTTTATGCTCTCGTTAAGTAGTGTAGCACTTGCAGCTCCTAAAGG
TATCTGTACCCCTGATAATGGCGTATTTCACAGTACGCTTGATTTCTCGGGATATCTTATTACCGCGAACGAAAATAAGG
TTGGAACGACATTTAACACCACTGTAACTAATGGATCCTCATATCCTGGACGCTGTCATTGTGATACTGGTAACGTAGGA
GAATTCCCCTATATCTATTATACGTCAAAAATAAACCAGGCATTAACTTATGCTGGGGTTCACTCTAATATTAATTATTA
TGATCTTAATCCGAACCTTGATGTTGGGATTGCTATAGATATTCTTGGGGTTGGGTATGTGAATGCACCTTTTGAATATC
ATGCTAACAACCCGTCTGGTAATACAAAGTACAATTGCAACCGCATTGAACCTTTAAGTATATCTAGTGGGGCTAAAGCG
ATAGTATATTTTTATATCAAGAAGACATTTGCAGGAAAATTGATTATTCCTGAAACAAAGATAGTGACATTGTATGGAAC
AATTAGCCGTGACACCCCGGTGGATTACTCACAGCCGATGGCTGATGTTTATATTCGGGGCGATATTACAGCTCCGCAAA
GTTGCGAAATAAATAATTTACAGCCAGTTTATTTTGATTTTAAAGAAATACCAGCTGCAGATTTTTCATCTGTTGTTGGA
AGTGCGGTAACAACACATAAAATTACTAAAACGGTCACTATTGAGTGTGAAAACCTGGGGATACTGAATACCGATGATAT
CAGTACGTCTTTTTATGCTACCGAACCCAATACGGACAATTCAATGGTCGTAACTTCAAACTCTAACGTGGGGATAAAAA
TTTACGACAAAAATAATAAGGAAATCAAAGTGAACGGTGGTGAGTTGCCAACAGACATGGGTAAATCAACAGTGTATGGT
GAAAAATCAGGTAGTGTAACTTTTTCAGCTGCTCCTGCGAGCCTTACTGGAGCTCGCCCATCCCCGGGGCAATTTACTGC
AACAGCGACGATAACTGTTGAGATTGTGCGCTAA

Upstream 100 bases:

>100_bases
AACGCCTCAACAAAATGCATCTTCAATTATTCACTTTCGACACCAGAAAGTGAGAGCGGATTAATTGAACAGGGTGTGAC
ATGTCATTAAAAGGATTTTT

Downstream 100 bases:

>100_bases
TAGGTCTGACAACGATTGTTCATCACATCGTTGTCATCTCACCCATTTCTTTATCACTTTTAAATGCATCATGACAAAAA
GATGACATGTGGGATTTTCA

Product: putative fimbrial protein LpfD; putative adhesin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSGYLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVG
EFPYIYYTSKINQALTYAGVHSNINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLQPVYFDFKEIPAADFSSVVG
SAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYG
EKSGSVTFSAAPASLTGARPSPGQFTATATITVEIVR

Sequences:

>Translated_357_residues
MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSGYLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVG
EFPYIYYTSKINQALTYAGVHSNINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLQPVYFDFKEIPAADFSSVVG
SAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYG
EKSGSVTFSAAPASLTGARPSPGQFTATATITVEIVR
>Mature_357_residues
MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSGYLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVG
EFPYIYYTSKINQALTYAGVHSNINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLQPVYFDFKEIPAADFSSVVG
SAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYG
EKSGSVTFSAAPASLTGARPSPGQFTATATITVEIVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787173, Length=360, Percent_Identity=23.0555555555556, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789534, Length=373, Percent_Identity=24.6648793565684, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38655; Mature: 38655

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSGYLITANENKVGTTFNT
CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEE
TVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHSNINYYDLNPNLDVGIAID
EEECCCCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEEEE
ILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKAIVYFYIKKTFAGKLIIPETK
EEEECEECCCEEEECCCCCCCCEEECCEECEEEECCCCCEEEEEEEEHHCCCEEEECCCE
IVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLQPVYFDFKEIPAADFSSVVG
EEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHC
SAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTSNSNVGIKIYDKNNK
CCCEEEEEEEEEEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCC
EIKVNGGELPTDMGKSTVYGEKSGSVTFSAAPASLTGARPSPGQFTATATITVEIVR
EEEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSGYLITANENKVGTTFNT
CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEE
TVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHSNINYYDLNPNLDVGIAID
EEECCCCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEEEE
ILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKAIVYFYIKKTFAGKLIIPETK
EEEECEECCCEEEECCCCCCCCEEECCEECEEEECCCCCEEEEEEEEHHCCCEEEECCCE
IVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLQPVYFDFKEIPAADFSSVVG
EEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHC
SAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTSNSNVGIKIYDKNNK
CCCEEEEEEEEEEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCC
EIKVNGGELPTDMGKSTVYGEKSGSVTFSAAPASLTGARPSPGQFTATATITVEIVR
EEEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]