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The map label for this gene is yibD

Identifier: 218697339

GI number: 218697339

Start: 4167043

End: 4168077

Strand: Reverse

Name: yibD

Synonym: EC55989_4082

Alternate gene names: 218697339

Gene position: 4168077-4167043 (Counterclockwise)

Preceding gene: 218697340

Following gene: 218697335

Centisome position: 80.86

GC content: 45.8

Gene sequence:

>1035_bases
ATGATGAACAGCACCAATAAACTTAGTGTTATTATTCCGTTATATAATGCGGGCGATGATTTCCGCACTTGTATGGAATC
TTTAATTACGCAAACCTGGACTGCTCTGGAAATCATTATTATTAACGATGGTTCAACGGATAATTCTGTTGAAATAGCAA
AGCATTACGCAGAAAACTATCCGCACGTTCGTTTGTTGCATCAGGCGAATGCTGGCGCATCGGTGGCGCGTAATCGTGGG
ATTGAAGTGGCAACGGGCAAATATGTCGCTTTTGTCGATGCTGACGATGAAGTCTATCCCACCATGTACGAAACGCTGAT
GACCATAGCGTTAGAGGACGACCTCGACGTGGCGCAGTGCAACGCTGACTGGTCTTTTCGTGAAACGGGAGAAACCTGGC
AATCCATCCCCAGCGATCGCCTTCGCTCAACCGGTGTATTAACCGGCCCGGACTGGCTGCGGATGGGGCTTTCTTCGCGC
CGTTGGACTCACGTTGTCTGGATGGGGGTTTATCGCCGCGATGTTATTGTTAAAAATAACATTAAATTTATTGCCGGATT
ACATCATCAGGATATTGTCTGGACAACAGAATTCATGTTTAATGCGCTGCGTGCGCGATATACCGAGCAATCATTATATA
AATATTATCTGCATAATACGTCAGTGAGTCGGTTGCATAGACAAGGGAATAAAAACCTTAATTATCAACGTCACTATATT
AAGATTACCCGCCTGCTGGAGAAATTAAATCGAAATTATGCCGACAAAATTACGATTTATCCGGAATTTCATCAGCAAAT
AACTTACGAAGCATTGCGTGTTTGCCATGCGGTGCGCAAAGAGCCGGATATTCTTACCCGCCAACGGATGATTGCCGAGA
TATTTACTTCCGGTATGTATAAACGCCTGATTACCAATGTGCGCAGCGTGAAGGTGGGTTACCAGGCGTTACTGTGGTCT
TTCCGCTTATGGCAATGGCGCGACAAAACGCGGTCGCACCATCGCATTACGCGTAGCGCCTTTAATTTGCGCTAG

Upstream 100 bases:

>100_bases
TGACTCTCTCACCTGTAAAAATAATATCTCACAGGCTTAATAGTTTCTTAATACAAAGCCTGTAAAACGTCAGGATAACT
TCAGAGGTCGTCGGTAATTT

Downstream 100 bases:

>100_bases
CGTTAAGTTTTGCCGCTTCGGGCTGTTTGCCCCAGCCTTGCCACTGATGCTGGAAGTAAACGATCAGCGTGCTCTGGCTG
ATGCTTTCGCTTAATACTTC

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTIALEDDLDVAQCNADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR

Sequences:

>Translated_344_residues
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTIALEDDLDVAQCNADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR
>Mature_344_residues
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTIALEDDLDVAQCNADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=344, Percent_Identity=98.546511627907, Blast_Score=710, Evalue=0.0,
Organism=Escherichia coli, GI1787259, Length=95, Percent_Identity=30.5263157894737, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40421; Mature: 40421

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
PHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTIALEDDLDVAQC
CCEEEEEECCCCHHHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEC
NADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNN
CCCCCHHHCCHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEEEHHHCCEEEECC
IKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYI
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMY
HHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
PHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTIALEDDLDVAQC
CCEEEEEECCCCHHHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEC
NADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNN
CCCCCHHHCCHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEEEHHHCCEEEECC
IKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYI
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMY
HHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]