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The map label for this gene is ldrD

Identifier: 218697249

GI number: 218697249

Start: 4066107

End: 4066349

Strand: Reverse

Name: ldrD

Synonym: EC55989_3988

Alternate gene names: 218697249

Gene position: 4066349-4066107 (Counterclockwise)

Preceding gene: 218697250

Following gene: 218697245

Centisome position: 78.88

GC content: 51.44

Gene sequence:

>243_bases
GTGGCATTGGTTGCTGGAGAGAGAAAACCCCCGCACGTTGCAGGTATGCACCTGACAACACCACGGGGGCCATTCTTGCA
TCCAAACAATACAAGAATAGCCGCGAAACGTTGTCATTACAATACAGGCGGCTATATGACGCTCGCAGAACTGGGCATGG
CCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGTATTCTTGCCAGTATGATCGTGAACTGGCTGAACAAGCGGAAG
TAA

Upstream 100 bases:

>100_bases
TGAAGATGAGACGGATTCCGGAACAGAAAAACAGTCGTAGAATCAGCGTCAAGCCGGAAGGATTCCGGTGAGGCGCAATG
TTGCGGGGGCTTAATCCCTG

Downstream 100 bases:

>100_bases
CGTGCCATGCGGGCGTCAGGCTGCCGTAATGGCAATTTGCGCCCGGATCAGGCCGCAGGGGTGAAACTCTGCGGCCTTTT
TCGTAAGAAAAATGCAACGG

Product: toxic polypeptide, small

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Sequences:

>Translated_80_residues
MALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
>Mature_79_residues
ALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Specific function: Toxic peptide whose overexpression causes rapid cell killing and nucleoid condensation of the host cell. Overexpression induces stress-response and a number of membrane protein genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the toxic peptide ldr family [H]

Homologues:

Organism=Escherichia coli, GI48994945, Length=35, Percent_Identity=97.1428571428571, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8805; Mature: 8673

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGGYMTLAELGMAFWHDLA
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEHCCCCCCCCCCHHHHHHHHHHHHHHH
APVIAGILASMIVNWLNKRK
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGGYMTLAELGMAFWHDLA
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEHCCCCCCCCCCHHHHHHHHHHHHHHH
APVIAGILASMIVNWLNKRK
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]