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The map label for this gene is yrfD

Identifier: 218697075

GI number: 218697075

Start: 3856484

End: 3857263

Strand: Reverse

Name: yrfD

Synonym: EC55989_3800

Alternate gene names: 218697075

Gene position: 3857263-3856484 (Counterclockwise)

Preceding gene: 218697077

Following gene: 218697074

Centisome position: 74.83

GC content: 57.56

Gene sequence:

>780_bases
ATGGCATTTAAGATCTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGTAGCGGTTGCGATCGTGCGGGGAGCAAA
AGAATGCTTTTTGCAACGCTGGTGGCGGTTGCCGCTGGAGAACGACATTATCAAAGATGGGCGGATTGTTGATGCGCAGC
AGCTGGCTAAAACGTTGTTACCGTGGAGTCGCGAACTGCCGCAGCGTCATCACATTATGTTGGCGTTTCCCGCCAGTCGC
ACATTACAGCGGTCATTTCCGCGCCCGTCGATGTCCCTTGGTGAGCGGGAGCAAACGGCCTGGCTGTCAGGGACGATGGC
CCGCGAGCTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACTCACTCAGCCCCGCCTATAACGTGACTG
CCGCGCAAAGCAAAGAGCTGGCAACGCTACTTACTCTGGCAGAAAGGTTGCGTGTTCATGTGAGCGCGATCACCCCGGAT
GCCAGTGCATTACAGCAATTCCTGCCTTTTTTACCTTCTCATCAGCAATGTCTGGCCTGGCGTGATAACGAACAGTGGCT
GTGGGCGACACGCTGTCGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCGCGAAGGAGCTGGCGGCAGCGTTATCCG
TTGATCCCGAAAGCGTCGCGATATGTGGCGAAGGGGGATTTGATCCCTGGGAGGCCGTTTCTGTTCGTCAGCCGCCGCTA
CCGCCGCCAGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGA

Upstream 100 bases:

>100_bases
TTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCCGTCAGAGTGACGG
GTGATAAGGAGATCATCACA

Downstream 100 bases:

>100_bases
TGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTCTGCTGCTGGCCGT

Product: putative pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQQFLPFLPSHQQCLAWRDNEQWLWATRCRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKAY

Sequences:

>Translated_259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQQFLPFLPSHQQCLAWRDNEQWLWATRCRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKAY
>Mature_258_residues
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRT
LQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDA
SALQQFLPFLPSHQQCLAWRDNEQWLWATRCRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPLP
PPGGDFAIALGLALGKAY

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=98.8416988416988, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28982; Mature: 28850

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL
CCEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQQFLPFLPSHQQCLAW
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRCRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
ECCCCEEEEECCCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKAY
CCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL
CEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQQFLPFLPSHQQCLAW
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRCRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
ECCCCEEEEECCCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKAY
CCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]