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The map label for this gene is yraR

Identifier: 218696859

GI number: 218696859

Start: 3655481

End: 3656116

Strand: Reverse

Name: yraR

Synonym: EC55989_3572

Alternate gene names: 218696859

Gene position: 3656116-3655481 (Counterclockwise)

Preceding gene: 218696861

Following gene: 218696858

Centisome position: 70.93

GC content: 55.66

Gene sequence:

>636_bases
ATGAGTCAGGTACTGATTACAGGCGCAACGGGGCTGGTGGGCGGTCACCTGCTGCGGATGTTGATTAACGAACCGAAAGT
TAACGCCATAGCCGCGCCGACGCGACGTCCGTTGGGCGATATGCCCGGGGTGTTTAATCCCCATGATCCGCAACTGACTG
ACGCGCTGGCGCAGGTCACCGATCCCATCGACATTGTGTTTTGTTGTCTCGGCACCACGCGGCGAGAAGCGGGGAGCAAA
GAGGCGTTTATTCATGCCGATTACACGCTGGTAGTGGATACCGCATTAACCGGGCGGCGACTGGGCGCGCAGCATATGCT
GGTGGTCAGTGCTATGGGTGCCAATGCCCACTCGCCGTTTTTCTATAACCGCGTCAAAGGGGAGATGGAAGAAGCATTAA
TCGCCCAGAACTGGCCGAAATTGACCATTGCTCGCCCGTCGATGTTACTGGGCGATCGTAGCAAACAGCGGATGAACGAA
ACGCTTTTTGCGCCGCTGTTCCGTTTATTACCCGGTAACTGGAAATCCATTGATGCGAGAGACGTGGCGCGGGTCATGCT
GGCAGAGGCGATGCGGCCCGGGCATGAAGGTGTGACGATTTTAAGCTCTTCAGAATTACGCAAAAGAGCTGAATAA

Upstream 100 bases:

>100_bases
AGGCGAATTTCCCACAATCGGGGATAATTACCTCATGGTCTATTAAGCCTGGTGCATGAGCCGTGGAGCGCAAGGCAGAC
AATTCTGTAAAGGAGCGAAG

Downstream 100 bases:

>100_bases
TTATTCCCAAGAATTGATAGTGAGCGTAATATTCACGCGCTCAATTATCATAACTTATTCCTGGGGAATGCTATGACTGG
TCAGTCTTCATCTCAGGCGG

Product: putative nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSK
EAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPGHEGVTILSSSELRKRAE

Sequences:

>Translated_211_residues
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSK
EAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPGHEGVTILSSSELRKRAE
>Mature_210_residues
SQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKE
AFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNET
LFAPLFRLLPGNWKSIDARDVARVMLAEAMRPGHEGVTILSSSELRKRAE

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=208, Percent_Identity=31.7307692307692, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI148728168, Length=208, Percent_Identity=31.7307692307692, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI148728164, Length=208, Percent_Identity=31.7307692307692, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI148728166, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI87082218, Length=211, Percent_Identity=98.5781990521327, Blast_Score=430, Evalue=1e-122,
Organism=Caenorhabditis elegans, GI71983631, Length=213, Percent_Identity=30.5164319248826, Blast_Score=97, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6320840, Length=160, Percent_Identity=29.375, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23124; Mature: 22993

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVT
CCCEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
DPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CHHHHHHHHCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARVMLAEAMRPGHEGVTILSSSELRKRAE
HHHHHHHHHHHCCCCCCEEEEECHHHHHHCC
>Mature Secondary Structure 
SQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVT
CCEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
DPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CHHHHHHHHCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARVMLAEAMRPGHEGVTILSSSELRKRAE
HHHHHHHHHHHCCCCCCEEEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]