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The map label for this gene is epsF

Identifier: 218696671

GI number: 218696671

Start: 3455195

End: 3456418

Strand: Reverse

Name: epsF

Synonym: EC55989_3376

Alternate gene names: 218696671

Gene position: 3456418-3455195 (Counterclockwise)

Preceding gene: 218696672

Following gene: 218696670

Centisome position: 67.05

GC content: 57.84

Gene sequence:

>1224_bases
ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGTATGATTGAGGCGGATTCCGCGCGTCA
TGCCCGCCAGTTGTTGCGCGGTAAAGAGCTTATCCCCGTGCATATTGAAGCCCGGATGAATACTTCGTCAGGGGGGATGT
TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGGCGGCAGATCTTGCGCTGTTCACGCGCCAACTGGCAACGCTGGTA
CAGGCAGCAATGCCGCTGGAAACCTGCTTACAGGCGGTCAGTGAGCAAAGTGAAAAACTGCATGTAAAAAGCCTCGGAAT
GGCGCTGCGCAGCCGGATTCAGGAAGGTTACACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGATTCTCTGT
TTTGTTCGATGGTTGCTGCCGGAGAAAAATCCGGGCATCTCGACGTGGTGCTTAATCGCCTGGCAGATTACACCGAACAG
CGACAGCGCCTGAAATCACGTCTATTGCAGGCCATGCTCTATCCGCTGGTTCTGCTGGTGGTGGCAACGGGCGTAGTCAC
TATTTTGCTGACGGCAGTGGTGCCGAAAATCATCGAACAGTTTGATCATCTCGGACACGCGCTACCCGCCTCAACCCGCA
CGCTTATTGCCATGAGCGACGCGTTACAGGCCAGCGGCGTTTACTGGCTGGCGGGTTTGCTGGGGCTTCTGGTGCTGGGG
CAACGGCTACTTAAAAATCCTGCTATGCGCCTGCGCTGGGATCAAACCGTGCTGCGCCTGCCTGTGACGGGGCGTGTTGC
GCGCGGGCTGAATACGGCGCGTTTTTCCCGCACCTTAAGCATCCTCACCGCCAGCAGTGTTCCGCTACTGGAAGGTATTC
AGACTGCTGCCGCCGTGTCGGCAAATCGCTATGTCGAACAACAACTACTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC
AGTCTGCGCGCCGCGCTGGCGGAGTTGCGCCTGTTCCCGCCGATGATGCTGTACATGATCGCCTCCGGCGAACAGAGCGG
CGAACTGGAAACCATGCTTGAGCAGGCCGCAGTCAACCAGGAACGGGAATTTGATACCCAGGTGGGGCTGGCGTTAGGGC
TGTTTGAACCGGCGCTGGTGGTGATGATGGCGGGCGTGGTGCTGTTTATTGTCATCGCCATCCTCGAGCCGATGCTGCAA
CTGAATAATATGGTTGGAATGTAA

Upstream 100 bases:

>100_bases
TCCGACAACACTCTGCGGGTATCCGCAGCAACGGCATTGAGAAAGTGCTCGCCGGAGAAACCTCTCTCGATGAAGTTCTG
CGGGTAACCATGGAGGCGTA

Downstream 100 bases:

>100_bases
TTTACGGAGTTATCACATGAATTCGTTATCCCGCACACAAAAACCACGGGCAGGTTTTACCCTGCTGGAAGTGATGGTGG
TGATTGTTATTCTTGGCGTC

Product: General secretion pathway protein F

Products: NA

Alternate protein names: Cholera toxin secretion protein epsF [H]

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHAHRRVAAADLALFTRQLATLV
QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
RQRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLG
QRLLKNPAMRLRWDQTVLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS
SLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ
LNNMVGM

Sequences:

>Translated_407_residues
MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHAHRRVAAADLALFTRQLATLV
QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
RQRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLG
QRLLKNPAMRLRWDQTVLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS
SLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ
LNNMVGM
>Mature_406_residues
ALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHAHRRVAAADLALFTRQLATLVQ
AAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQR
QRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLGQ
RLLKNPAMRLRWDQTVLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSS
LRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQL
NNMVGM

Specific function: Required for secretion of cholera toxin through the outer membrane [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=403, Percent_Identity=45.409429280397, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1786295, Length=409, Percent_Identity=25.1833740831296, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44911; Mature: 44779

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHA
CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHH
HRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRLLKNPAMRLRWDQTVLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS
HHHHCCCHHEEECCCHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMVGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHA
CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHH
HRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRLLKNPAMRLRWDQTVLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS
HHHHCCCHHEEECCCHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMVGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]