Click here to switch to the map view.

The map label for this gene is 218696639

Identifier: 218696639

GI number: 218696639

Start: 3428639

End: 3429160

Strand: Reverse

Name: 218696639

Synonym: EC55989_3340

Alternate gene names: NA

Gene position: 3429160-3428639 (Counterclockwise)

Preceding gene: 218696641

Following gene: 218696638

Centisome position: 66.52

GC content: 49.81

Gene sequence:

>522_bases
ATGCAGGTTTCACAGGAGAGAGCCATGAGCAGTTCGTTTCAGAATGAAATCCCGAAAGCAAGGGTAAATCTGAAATTAGA
CCTACATACGGGTGGTGGGCAGAAGAAAGTGGAGCTTCCGCTCAAACTTCTGGTTGCCGGTGATTTCAGTAACGGACAGG
AAGAGCGTCCACTGTCAGAGCGTGTAAAAACGGATATTAATAAAAACAATTTTAATGATGTTCTGGCAGATATCTCCCCG
TCTGTACATCTGAATGTGGAGAACACGCTTGCCGGTGATGGCTCTGAAGAGAGCATCAGCCTGACTTTCCGCAATATGAA
CGATTTCACGCCAGAGCAGGTCGCCCGACAGATTCCCCGTCTTAAAGCCATGCTGGCCATGCGTAGCCTTCTGCGGGACC
TGAAAGCCAATCTGCTGGATAACGTGACTTTCCGTAAAGAGCTGGAAAAAATTCTGCGTGACCCGGCACTGAGTCAGACG
CTGCGTGATGAACTGCGTGCACTGGTGCCGGAAAAGGCGTGA

Upstream 100 bases:

>100_bases
ATGTATCTGTCATATTGAGATTTTTCAGATCTTCGTCCTATAATGATCAAAATTAAATCAGTGCACAAGGGGAGGCATCT
GCGGTGATGGAACCCCTGAG

Downstream 100 bases:

>100_bases
TTTAACGGATTACGAGAGAAAATGCTGATGTCTGTACAGAAAGAAAAGAACGTTGCAGAGAGCGTGGTATCTGAAGCGCA
TGCCGGCGACAGCGTATATG

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Cytoplasmic Protein; T6ss S; Protein ImpB; Conserved Protein; Cytoplasmic Protein SciH; Type VI Secretion Protein VasQ; Type VI Secretion System Protein; Intracellular Growth Locus Subunit A; Intracellular Growth Locus Protein IglA; Type VI Secretion; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQVSQERAMSSSFQNEIPKARVNLKLDLHTGGGQKKVELPLKLLVAGDFSNGQEERPLSERVKTDINKNNFNDVLADISP
SVHLNVENTLAGDGSEESISLTFRNMNDFTPEQVARQIPRLKAMLAMRSLLRDLKANLLDNVTFRKELEKILRDPALSQT
LRDELRALVPEKA

Sequences:

>Translated_173_residues
MQVSQERAMSSSFQNEIPKARVNLKLDLHTGGGQKKVELPLKLLVAGDFSNGQEERPLSERVKTDINKNNFNDVLADISP
SVHLNVENTLAGDGSEESISLTFRNMNDFTPEQVARQIPRLKAMLAMRSLLRDLKANLLDNVTFRKELEKILRDPALSQT
LRDELRALVPEKA
>Mature_173_residues
MQVSQERAMSSSFQNEIPKARVNLKLDLHTGGGQKKVELPLKLLVAGDFSNGQEERPLSERVKTDINKNNFNDVLADISP
SVHLNVENTLAGDGSEESISLTFRNMNDFTPEQVARQIPRLKAMLAMRSLLRDLKANLLDNVTFRKELEKILRDPALSQT
LRDELRALVPEKA

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19450; Mature: 19450

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSQERAMSSSFQNEIPKARVNLKLDLHTGGGQKKVELPLKLLVAGDFSNGQEERPLSE
CCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCHHH
RVKTDINKNNFNDVLADISPSVHLNVENTLAGDGSEESISLTFRNMNDFTPEQVARQIPR
HHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
LKAMLAMRSLLRDLKANLLDNVTFRKELEKILRDPALSQTLRDELRALVPEKA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQVSQERAMSSSFQNEIPKARVNLKLDLHTGGGQKKVELPLKLLVAGDFSNGQEERPLSE
CCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCHHH
RVKTDINKNNFNDVLADISPSVHLNVENTLAGDGSEESISLTFRNMNDFTPEQVARQIPR
HHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
LKAMLAMRSLLRDLKANLLDNVTFRKELEKILRDPALSQTLRDELRALVPEKA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA