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The map label for this gene is yggS

Identifier: 218696549

GI number: 218696549

Start: 3324573

End: 3325277

Strand: Direct

Name: yggS

Synonym: EC55989_3244

Alternate gene names: 218696549

Gene position: 3324573-3325277 (Clockwise)

Preceding gene: 218696547

Following gene: 218696550

Centisome position: 64.49

GC content: 51.35

Gene sequence:

>705_bases
ATGAACGATATTGCGCATAACCTGGCACAGGTCCGGGACAAAATCTCAGCGGCTGCAACGCGTTGCGGCCGTTCTCCAGA
AGAAATTACGCTGCTTGCAGTCAGTAAAACAAAACCTGCGAGCGCCATCGCAGAAGCCATTGATGCCGGGCAGCGTCAAT
TTGGTGAAAACTACGTTCAGGAAGGGGTGGATAAAATTCGCCACTTTCAGGAACTGGGCGTAACAGGATTAGAATGGCAT
TTTATTGGCCCGTTGCAGTCTAATAAAAGCCGCCTGGTGGCAGAGCATTTCGACTGGTGTCATACCATCGACCGTTTGCG
CATCGCTACCCGCCTCAACGATCAGCGCCCGGCAGAACTTCCCCCTCTTAACGTACTGATTCAAATTAATATTAGTGATG
AAAACAGTAAGTCCGGGATTCAACTGGCAGAACTGGACGAGCTGGCAGCTGCGGTCGCTGAACTACCGCGTTTACGTCTG
CGCGGGCTGATGGCAATCCCTGCACCTGAGTCAGAATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCATT
TGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGG
CAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCGCGTGATTACTCTAAAAAATAA

Upstream 100 bases:

>100_bases
CATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATCCGAGACGTTATGCTTTACACTAAGGGCCACAATTTCTTCCATATT
CATACTAAGATCCTCGGAAA

Downstream 100 bases:

>100_bases
GGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTA
CGCATCTGGATGCAGTGGGC

Product: putative enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK

Sequences:

>Translated_234_residues
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
>Mature_234_residues
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=247, Percent_Identity=36.4372469635627, Blast_Score=124, Evalue=5e-29,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=100, Blast_Score=482, Evalue=1e-138,
Organism=Caenorhabditis elegans, GI17533025, Length=229, Percent_Identity=35.3711790393013, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=239, Percent_Identity=38.0753138075314, Blast_Score=115, Evalue=7e-27,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=40.9302325581395, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGGS_ECO57 (P67082)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C91107
- PIR:   F85952
- RefSeq:   NP_289523.1
- RefSeq:   NP_311854.1
- ProteinModelPortal:   P67082
- SMR:   P67082
- EnsemblBacteria:   EBESCT00000027740
- EnsemblBacteria:   EBESCT00000057804
- GeneID:   916352
- GeneID:   958162
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4296
- KEGG:   ecs:ECs3826
- GeneTree:   EBGT00050000011688
- HOGENOM:   HBG289671
- OMA:   HGSTMVR
- ProtClustDB:   CLSK880540
- BioCyc:   ECOL83334:ECS3826-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 25788; Mature: 25788

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA
CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA
CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796