Definition | Escherichia coli 55989, complete genome. |
---|---|
Accession | NC_011748 |
Length | 5,154,862 |
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The map label for this gene is ybcM
Identifier: 218695539
GI number: 218695539
Start: 2196536
End: 2197333
Strand: Reverse
Name: ybcM
Synonym: EC55989_2154
Alternate gene names: 218695539
Gene position: 2197333-2196536 (Counterclockwise)
Preceding gene: 218695540
Following gene: 218695535
Centisome position: 42.63
GC content: 37.34
Gene sequence:
>798_bases ATGCTGGCAAAAGATAAGACTAACCTAAAGATTGAAGAAATACGGATGCATAAACATCATGAGATTCACAGGGTTAAGCC TCTTATGCCAGCTTTATGTCGTATCCGTCAGGGAAAAAAAGTTATCAATTGGGAGACGCATAGTCTAACTGTTGATAATA ATCAGATAATATTATTTCCCTGTGGATATGAATTTTATATTGCGAATTATCCAGAAGCAGGTCTTTATCTTGCAGAAATG CTTTATTATCCCATTGATCTAATTGAAAAGTTTCAAAAATTTTATGCGATAACTGATCAAATTCGTAACACGACAGGTTT CTGCTTACCTCAGAACCCCGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTATTTCCCGAGGCTTCTCAACGCAAA TTCAGGAACACTTAGCAATGGGCGTTCTACTTTCATTAGGAGCACATCATGTTAATTGTTTACTTTTATCAGATAGTAAA CAATCATTAATAAGTCGTTGTTATAACCTAATGCTATCCGAACCTGGAACAAAATGGACAGCAAACAAGGTAGCGAGATA TCTCTACATTTCTGTTTCCACATTGCATCGCCGTCTGGCAAGCGAGGGAGTAAGTTTTCAAAGTATATTGGACGACGTGA GGTTAAATAATGCGTTGTCTGCTATACAAACGACAGTAAAACCCATCAGCGAGATTGCCAGGGAAAATGGTTACAAGTGT CCTTCTCGTTTTACTGAAAGGTTCCATAATCGTTTTAAGATAACACCAAGAGAGCTAAGAAAAGCGTCCAGAGAGTAA
Upstream 100 bases:
>100_bases TTCTAATTCCAGCGGAGCGTTAGTTGGTTATATGTTTAATGCCAATAAAATTGCAACCGCTGAGATAACACCAGTTTATG AGATAAAGTAGGGTAAGAGT
Downstream 100 bases:
>100_bases AAGTATTTTATGAAGGAGCAACAGCATCGATTTTTATTTTGGAAAATAAATACGGCATACTCAACCTATTGGAGTCTGAA CAATCCGGTGACTTCTGCGC
Product: putative DNA-binding transcriptional regulator; DLP12 prophage
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC PSRFTERFHNRFKITPRELRKASRE
Sequences:
>Translated_265_residues MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC PSRFTERFHNRFKITPRELRKASRE >Mature_265_residues MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC PSRFTERFHNRFKITPRELRKASRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1786758, Length=265, Percent_Identity=92.0754716981132, Blast_Score=512, Evalue=1e-146,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018060 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30766; Mature: 30766
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSRFTERFHNRFKITPRELRKASRE HHHHHHHHHHCCCCCHHHHHHHCCC >Mature Secondary Structure MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSRFTERFHNRFKITPRELRKASRE HHHHHHHHHHCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]