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The map label for this gene is yobB

Identifier: 218695409

GI number: 218695409

Start: 2076623

End: 2077279

Strand: Direct

Name: yobB

Synonym: EC55989_2021

Alternate gene names: 218695409

Gene position: 2076623-2077279 (Clockwise)

Preceding gene: 218695408

Following gene: 218695410

Centisome position: 40.28

GC content: 52.05

Gene sequence:

>657_bases
ATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGA
GTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCTTTCTTTACTGGGGTGTGATTATTCGC
GACGTGCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATC
ATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGG
GATCTACCATCAGAGTCATGGTGCATGTCTGGGCCGTCGTTCCAGAACCATCACGGTGGTCGATGAACAACCGCAAGGTA
TGGATATGGACCCGACCTGTTCACTGTTTACTACAGGGCAATGTCTGGGAGAACCCGACCTGCTGGCGTCGGCCCGTCGC
TTACAATTTTTTTCACATCAGTACTCGATTGCCGTGCTGATGGCAAATGCCCGTGGTAACAGTGCACTATGGGATGAATA
TGGTCGTCTCATCGTTCGCGCCGATCGTGGTTCATTATTGTTAGTCGGTCAGCGTTCATCACAGGGTTGGCAAGGCGATA
TCATTCCATTACGCTAG

Upstream 100 bases:

>100_bases
ACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACCCATAATTTGCAGTC
ATTTTGAAAAGGAAGTCATT

Downstream 100 bases:

>100_bases
GCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATT
GCCTCTGTTGATGTCATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTI
IAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR

Sequences:

>Translated_218_residues
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTI
IAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
>Mature_217_residues
SFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTII
AGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRL
QFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788148, Length=218, Percent_Identity=100, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBB_ECOLI (P76280)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64946
- RefSeq:   AP_002463.1
- RefSeq:   NP_416357.1
- ProteinModelPortal:   P76280
- STRING:   P76280
- EnsemblBacteria:   EBESCT00000003967
- EnsemblBacteria:   EBESCT00000016358
- GeneID:   948329
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1832
- KEGG:   eco:b1843
- EchoBASE:   EB3784
- EcoGene:   EG14030
- eggNOG:   COG0388
- GeneTree:   EBGT00050000010398
- HOGENOM:   HBG416047
- OMA:   FAPWVTS
- ProtClustDB:   CLSK880230
- BioCyc:   EcoCyc:G7015-MONOMER
- Genevestigator:   P76280
- InterPro:   IPR003010
- Gene3D:   G3DSA:3.60.110.10

Pfam domain/function: PF00795 CN_hydrolase; SSF56317 Ntlse/CNhydtse

EC number: NA

Molecular weight: Translated: 24395; Mature: 24264

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCCCCCCCCCC
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRR
CCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCEECCC
SRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
SALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
CHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
SFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCCCCCCCCCC
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRR
CCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCEECCC
SRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
SALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
CHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503