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The map label for this gene is ydjA

Identifier: 218695323

GI number: 218695323

Start: 1996556

End: 1997107

Strand: Reverse

Name: ydjA

Synonym: EC55989_1933

Alternate gene names: 218695323

Gene position: 1997107-1996556 (Counterclockwise)

Preceding gene: 218695328

Following gene: 218695322

Centisome position: 38.74

GC content: 55.62

Gene sequence:

>552_bases
ATGGATGCACTCGAACTATTGATCAATCGCCGTAGCGCCTCCCGCCTGGCTGAACCCGCGCCAACGGGTGAACAACTGCA
AAACATCCTGCGTGCGGGTATGCGTGCGCCGGACCATAAGTCCATGCAACCGTGGCATTTTTTTGTGATTGAAGGGGAAG
GGCGCGAGCGTTTCAGCGCCGTACTGGAACAGGGGGCGATTGCTGCCGGTAGTGATGACAAAGCTATCGACAAAGCCCGT
AATGCGCCGTTCCGCGCACCGCTCATCATCACGGTGGTGGCGAAATGCGAAGAAAATCATAAAGTCCCGCGATGGGAACA
GGAAATGTCTGCCGGATGCGCGGTCATGGCGATGCAAATGGCAGCCGTTGCCCAAGGATTTGGCGGCATCTGGCGCAGTG
GCGCATTAACTGAAAGTCCGGTAGTGCGTGAAGCATTCGGTTGCCGTGAGCAGGATAAAATTGTCGGTTTTCTCTACCTC
GGCACGCCGCAGTTGAAAGCATCTACGTCGATTAACGTCCCGGACCCGACGCCGTTTGTAACTTATTTCTGA

Upstream 100 bases:

>100_bases
ACCCAACCGGCACTTGTCAGCAGGAATTGCGGACTGTGCTGTAACAAAATCCACTCTCGTGTTAATTTTGTGAATAAATA
TCACGACAGGAGTTAATCAA

Downstream 100 bases:

>100_bases
TAATTGTCGCGAAACTGTCTGGATTGTGAGCAAAGGCGCAGGAATTCAGACACTCTCACTTATCACTTCACGGAATGAGG
GTTACCATACCCGGATTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTPFVTYF

Sequences:

>Translated_183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTPFVTYF
>Mature_183_residues
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKAR
NAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
GTPQLKASTSINVPDPTPFVTYF

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family

Homologues:

Organism=Escherichia coli, GI1788063, Length=183, Percent_Identity=100, Blast_Score=379, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDJA_ECO57 (P0ACY2)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C85786
- PIR:   G90937
- RefSeq:   NP_288198.1
- RefSeq:   NP_310498.1
- ProteinModelPortal:   P0ACY2
- SMR:   P0ACY2
- EnsemblBacteria:   EBESCT00000028142
- EnsemblBacteria:   EBESCT00000056450
- GeneID:   916910
- GeneID:   961736
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2798
- KEGG:   ecs:ECs2471
- GeneTree:   EBGT00050000010740
- HOGENOM:   HBG751302
- OMA:   LNRVSVP
- ProtClustDB:   PRK10828
- BioCyc:   ECOL83334:ECS2471-MONOMER
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: NA

Molecular weight: Translated: 20059; Mature: 20059

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: BINDING 35-35 BINDING 39-39

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHH
VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM
HHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCHHHHHHHH
AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFV
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEE
TYF
ECC
>Mature Secondary Structure
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHH
VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM
HHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCHHHHHHHH
AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFV
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEE
TYF
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796