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The map label for this gene is rimM

Identifier: 218690726

GI number: 218690726

Start: 3005623

End: 3006171

Strand: Reverse

Name: rimM

Synonym: ECED1_3047

Alternate gene names: 218690726

Gene position: 3006171-3005623 (Counterclockwise)

Preceding gene: 218690727

Following gene: 218690725

Centisome position: 57.71

GC content: 48.82

Gene sequence:

>549_bases
ATGAGCAAACAACTCACCGCGCAAGCACCTGTTGATCCCATCGTTTTGGGAAAAATGGGGTCGTCTTACGGTATTCGTGG
GTGGCTCAGAGTGTTTTCTTCCACCGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTTATCCAGAAGGCGGGTC
AGTGGCAGCAAGTCCAGCTGGAAAGCTGGAAGCACCACAATCAGGACATGATCATCAAGCTGAAAGGCGTTGACGATCGT
GATGCGGCGAACCTGCTGACGAATTGTGAAATTGTCGTGGATTCATCGCAGTTGCCTCAGCTTGAAGAGGGGGACTACTA
CTGGAAAGACCTGATGGGCTGCCAGGTAGTAACCACTGAAGGCTACGATCTCGGTAAAGTCGTAGATATGATGGAAACCG
GATCTAATGACGTTCTCGTCATTAAGGCAAACCTGAAAGATGCGTTTGGTATCAAGGAACGTCTCGTACCGTTCCTCGAT
GGGCAGGTTATCAAGAAAGTCGATCTCACTACTCGTTCAATCGAAGTAGATTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
CATCGCTCACTGGGTTGGCCAGGGCGCAACTATTTCTGATCGCGTTGCTGCGCTGATCAAAGAAGTAAACAAAGCAGCTT
AATCTGTCACGGTGGTCATG

Downstream 100 bases:

>100_bases
ACCACCGGATAAACGGTAAAAGACGGCGCTATGTGGATTGGCATAATTAGCCTGTTTCCTGAAATGTTCCGCGCAATTAC
CGATTACGGGGTAACTGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDR
DAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLTTRSIEVDWDPGF

Sequences:

>Translated_182_residues
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDR
DAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLTTRSIEVDWDPGF
>Mature_181_residues
SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRD
AANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDG
QVIKKVDLTTRSIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=100, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SHIBS (Q31XD7)

Other databases:

- EMBL:   CP000036
- RefSeq:   YP_409099.2
- ProteinModelPortal:   Q31XD7
- SMR:   Q31XD7
- EnsemblBacteria:   EBESCT00000079854
- GeneID:   3781727
- GenomeReviews:   CP000036_GR
- KEGG:   sbo:SBO_2744
- GeneTree:   EBGT00050000011104
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q31XD7
- ProtClustDB:   PRK00122
- BioCyc:   SBOY300268:SBO_2744-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20606; Mature: 20474

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE
HHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEC
GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECCC
GF
CC
>Mature Secondary Structure 
SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE
HHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEC
GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECCC
GF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA