Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 218690602

GI number: 218690602

Start: 2860095

End: 2860958

Strand: Reverse

Name: ypfJ [H]

Synonym: ECED1_2909

Alternate gene names: 218690602

Gene position: 2860958-2860095 (Counterclockwise)

Preceding gene: 218690603

Following gene: 218690601

Centisome position: 54.92

GC content: 53.24

Gene sequence:

>864_bases
ATGCGTTGGCAAGGGCGACGTGAAAGTGACAATGTTGAAGACAGGCGCAATAGCTCCGGCGGTCCGTCAATGGGCGGTCC
CGGTTTTCGCCTGCCAAGCGGTAAAGGCGGGCTGATTTTACTGATAGTCGTGCTGGTTGCAGGCTACTATGGCGTTGATT
TTACCGGGTTGATGACCGGACAGCCGGTTTCCCAACAGCAATCAACGCGGTCAATTAGCCCTAATGAAGACGAAGCCGCA
AAATTCACCTCGGTGATTCTGGCAACCACGGAAGACACCTGGGGACAGCAATTCGAGAAGATGGGTAAAACCTATCAGCA
ACCGAAGCTGGTCATGTACCGTGGAATGACGCGTACCGGCTGCGGGGCGGGCCAGTCCATAATGGGGCCATTCTATTGCC
CGGCGGATGGCACAGTTTATATCGATCTCTCCTTCTATGATGACATGAAAGACAAACTTGGCGCGGATGGCGATTTTGCC
CAGGGGTACGTTATCGCTCATGAAGTCGGTCATCATGTGCAGAAACTGTTAGGCATCGAGCCGAAAGTTCGTCAACTGCA
ACAAAACGCGACGCAGGCGGAAGTAAACCGCTTATCTGTGCGTATGGAACTCCAGGCCGACTGTTTTGCCGGTGTCTGGG
GGCATAGTATGCAGCAGCAAGGTGTTCTGGAAACCGGCGATCTGGAAGAGGCGCTGAACGCGGCGCAGGCCATCGGCGAT
GACCGTTTACAACAGCAAAGTCAGGGGCGAGTAGTACCAGACAGTTTCACTCATGGCACTTCTCAGCAACGCTATAGCTG
GTTTAAACGTGGTTTCGACAGCGGCGATCCGGCACAATGCAATACTTTTGGTAAAAGCATTTAA

Upstream 100 bases:

>100_bases
GAACGCTCATTCCTCCGCCATTTCATCCCGCTTTCCTGTGGTAATCTTCCTCTGAACCACCTACGATCATTTCTATAATG
AATATAATGTTGAGGTATCT

Downstream 100 bases:

>100_bases
CTTCCGGGGCAGGGATGGCTGAACTGACTGCGCTTCACACATTAACAGCGCAAATGAAACGTGAAGGGATCCGCCGCTTG
CTGGTGTTGAGCGGGGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDFTGLMTGQPVSQQQSTRSISPNEDEAA
KFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGD
DRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI

Sequences:

>Translated_287_residues
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDFTGLMTGQPVSQQQSTRSISPNEDEAA
KFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGD
DRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
>Mature_287_residues
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDFTGLMTGQPVSQQQSTRSISPNEDEAA
KFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGD
DRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=287, Percent_Identity=99.6515679442509, Blast_Score=593, Evalue=1e-171,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31495; Mature: 31495

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDFTGLMTG
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
QPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTG
CCCCHHHHHCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
CGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIE
CCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGD
HHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHCH
DRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDFTGLMTG
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
QPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTG
CCCCHHHHHCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
CGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIE
CCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGD
HHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHCH
DRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]