Click here to switch to the map view.

The map label for this gene is cI [C]

Identifier: 218690255

GI number: 218690255

Start: 2486453

End: 2487100

Strand: Direct

Name: cI [C]

Synonym: ECED1_2550

Alternate gene names: 218690255

Gene position: 2486453-2487100 (Clockwise)

Preceding gene: 218690233

Following gene: 218690256

Centisome position: 47.73

GC content: 51.85

Gene sequence:

>648_bases
ATGAAAACGATGCATGAAATTATCGGGGAAAGGATCAAGTCCCTTAGAGAAGCTAAAGGACTTAGCCAGGCTCAATTGGC
CAAGCTTTGCGGCTGGGCTGCGCCTTCACGCCTGGGGAACTACGAGTTAGGAACAAGAAAGGTTAGCGCGGATGACGCGC
TGGTTCTTGGGGCGGCACTCGGCGTATCTCCGGCAAAAATAATGTTTGGCGAGGATTCAGACGCTGTATTTCGCCAATAT
GAGTACCCGTTATTTTCTTCAGTGCAGGCCGGGCCGTTTTCGGAGGTTGGAAGCTACACAGCAAGCGATGCAAAGGCATG
GGTCCCAACGACCACAAAAGCCAGCGAAAAAGCTTTCTGGCTTGAGGTGAAAGGCCATTCTATGACTGCGCCACAGGGCG
TAAGGCCGAGTTTTCCTGAGGGTATGCTGATACTCGTTGATCCGGCCGAGCCGGTAGAGTCTGGGGATTTCTGCGTGGCT
TCTGCAAATGGTGATTCAGAGGCAACGTTCAAGAAGTATGAGAAGGATGCAGGGGTTAGTTACTTGGTTCCATTGAATCC
GGCATACAGAACCCTGGACTGCGATCACACATGCCGCATCATAGGCAAGGTAGTTAAGGCTCAGTGGCCTGAAGAGACGT
TTGGATGA

Upstream 100 bases:

>100_bases
CCCTAGTATTAATCACACACCCATTACACACAATTTGTGATTAACAGTCAACCTCAATTCGTGTACAGAGTTCAATCACG
TTGCGTGTTACATTTAAAGG

Downstream 100 bases:

>100_bases
TGGATGGTCGCAGAGATGCTCGTAGAGCATACAGCGATGCAGGAGAATTTATGGCACTTAATTTAGAAAGAATATCTTTT
ATAACCCCATTTGATAGCAG

Product: Repressor protein CI from phage

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKIMFGEDSDAVFRQY
EYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASEKAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVA
SANGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHTCRIIGKVVKAQWPEETFG

Sequences:

>Translated_215_residues
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKIMFGEDSDAVFRQY
EYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASEKAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVA
SANGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHTCRIIGKVVKAQWPEETFG
>Mature_215_residues
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKIMFGEDSDAVFRQY
EYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASEKAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVA
SANGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHTCRIIGKVVKAQWPEETFG

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 23260; Mature: 23260

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAAL
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHCCCCCCCCEEECCCCEEEEHHHH
GVSPAKIMFGEDSDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASEKAFW
CCCCEEEEECCCCHHHHHHHCCCHHHCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCEEE
LEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDSEATFKKYEKDAGVS
EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCE
YLVPLNPAYRTLDCDHTCRIIGKVVKAQWPEETFG
EEEECCCCCEEECCCHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAAL
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHCCCCCCCCEEECCCCEEEEHHHH
GVSPAKIMFGEDSDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASEKAFW
CCCCEEEEECCCCHHHHHHHCCCHHHCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCEEE
LEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDSEATFKKYEKDAGVS
EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCE
YLVPLNPAYRTLDCDHTCRIIGKVVKAQWPEETFG
EEEECCCCCEEECCCHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]