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The map label for this gene is ydcV [H]

Identifier: 218689371

GI number: 218689371

Start: 1579019

End: 1579813

Strand: Direct

Name: ydcV [H]

Synonym: ECED1_1597

Alternate gene names: 218689371

Gene position: 1579019-1579813 (Clockwise)

Preceding gene: 218689370

Following gene: 218689372

Centisome position: 30.31

GC content: 54.34

Gene sequence:

>795_bases
ATGCACTCTGATCGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGAT
AATCGCCGCCTATGCGTTTAACACTGAAGATGCGGCGTTTAGTTTTCCACCGCAGGGCCTGACGCTGCGCTGGTTTAGCG
TGGCAGCACAGCGTAGTGATATTCTTGATTCCGTGACACTGTCACTTAAAGTGGCGGCGCTGGCGACATTAATCGCGCTG
GTGTTAGGGACGCTGGCCGCTGCCGCGCTGTGGCGACGAGACTTTTTCGGTAAAAACGCCATTTCGTTGTTACTGCTGCT
GCCCATTGCGCTGCCGGGCATTGTCACTGGTCTGGCGCTATTAACCGCCTTTAAAACCATCAATCTGGAGCCGGGATTTT
TCACCATCGTGGTCGGTCATGCGACTTTTTGCGTAGTGGTGGTGTTTAACAATGTCATCGCCCGTTTTCGCCGCACCTCG
TGGAGTCTGGTTGAGGCGTCAATGGATCTTGGGGCCAATGGCTGGCAAACCTTCCGCTACGTAGTGTTGCCGAATCTCAG
TTCGGCGTTACTGGCTGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAATCATCGTGACGACATTTACGGCAGGTC
ATGAACGAACGTTACCGTTGTGGTTGCTCAATCAGCTTGGGCGACCGCGTGATGTACCGGTAACCAACGTGGTGGCACTG
CTGGTTATGTTGGTAACAACCTTGCCGATCCTGGGGGCCTGGTGGCTAACCCGCGAAGGCGACAATGGTCAATAA

Upstream 100 bases:

>100_bases
GGGGCGATTGGCAATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTGTTCTTATCGCACTGTACCTGGCGTTCGT
GAAACGTCTGGGAGCGTTCG

Downstream 100 bases:

>100_bases
CCACTGATACAGGAATATGCTATGCAACATAAGTTACTGATTAACGGAGAACTGGTTAGCGGCGAAGGGGAAAAACAGCC
TGTCTATAATCCGGCAACGG

Product: putative spermidine/putrescine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHSDRAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDSVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ

Sequences:

>Translated_264_residues
MHSDRAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDSVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ
>Mature_264_residues
MHSDRAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDSVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=264, Percent_Identity=99.2424242424242, Blast_Score=516, Evalue=1e-148,
Organism=Escherichia coli, GI1787368, Length=221, Percent_Identity=28.9592760180996, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=30.859375, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787080, Length=214, Percent_Identity=28.0373831775701, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28724; Mature: 28724

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSDRAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDSVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPILGAWWLTREGDNGQ
HHHHHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MHSDRAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDSVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPILGAWWLTREGDNGQ
HHHHHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]