Click here to switch to the map view.

The map label for this gene is ydcS [H]

Identifier: 218689368

GI number: 218689368

Start: 1575911

End: 1577056

Strand: Direct

Name: ydcS [H]

Synonym: ECED1_1594

Alternate gene names: 218689368

Gene position: 1575911-1577056 (Clockwise)

Preceding gene: 218689367

Following gene: 218689369

Centisome position: 30.25

GC content: 53.05

Gene sequence:

>1146_bases
ATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGCTCAGCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTAC
CAATTTAGAGAATCCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAGT
ACGACTGGGTAACGCAATTCGAAAAAGAGACAGGCTGCGCGGTGAATGTTAAAACCGCCGCGACTTCCGATGAAATGGTC
AGTCTGATGGCCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGCAAACGCGT
GCAGCCAATTAATACCGCCTTGATTCCCAACTGGAAAGCGCTCGATCCGCGCGTGGTTAAAGGCGACTGGTTTAACGTTG
GCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCG
GATAGCTGGCAAGTGGTTTTTGTTGAGCAGAATCTGCCGGACGGCAAGAGCAATAAAGGCCGGGTACAGGCTTATGATGG
CCCTATCTACATTGCGGATGCCGCGTTGTTCGTCAAAGCCACGCAGCCACAGTTGGGCATCAGTGATCCGTATCAACTCA
CCGAAGAACAGTATCAGGCGGTGCTGAAAGTGCTGCGCGATCAACATAATTTGATCCATCGCTACTGGCATGACACTACC
GTGCAAATGAGCGATTTCAAAAACGAGGGTGTGGTGGCTTCCAGTGCATGGCCCTATCAGGCCAACGCCCTGAAAGCCGA
AGGCCAGCCTGTCGCTACCGTTTTCCCGAAGGAGGGCGTTACCGGTTGGGCTGACACCACCATGCTACATAGCGAAGCGA
AACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACCCCAAAAGTGCAGGGCGATGTGGCGGCCTGGTTTGGC
TCGCTACCAGTAGTGCCGCAAGGGTGTAAAGCCAGTCCGTTATTAGGCGAGAAAGGTTGTGAAACAAACGGTTTTAACTA
TTTCGATAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATT
ACATTGCCATTATGGGCGGTCGCTAA

Upstream 100 bases:

>100_bases
GGGCCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAAT
TACGACAGGAGTAAGACCTT

Downstream 100 bases:

>100_bases
CTTCGTTGGGGTGTTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCACGGTTGTACGGTGACGTGCGCGCAGTAGAT
GGCGTCAGTATTGCGATAAA

Product: putative spermidine/putrescine ABC transporter subunit periplasmic-binding protein transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_381_residues
MSKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
>Mature_380_residues
SKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVS
LMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPD
SWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTTV
QMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGS
LPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=381, Percent_Identity=98.1627296587926, Blast_Score=781, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=319, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42305; Mature: 42174

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKA
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEECCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC
>Mature Secondary Structure 
SKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKA
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEECCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]