Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 218689365

GI number: 218689365

Start: 1571483

End: 1573444

Strand: Direct

Name: ydcP [H]

Synonym: ECED1_1590

Alternate gene names: 218689365

Gene position: 1571483-1573444 (Clockwise)

Preceding gene: 218689364

Following gene: 218689367

Centisome position: 30.17

GC content: 50.76

Gene sequence:

>1962_bases
GTGACCGTATCTTCTCATCGTCTTGAACTGTTAAGCCCGGCACGCGATGCCGCCATTGCCCGCGAAGCTATTTTGCACGG
TGCCGATGCTGTTTATATCGGCGGCCCTGGTTTTGGTGCCCGTCATAATGCCAGTAATAGCCTGAAAGATATTGCCGAGT
TGGTGCCGTTTGCCCATCGTTATGGTGCAAAAATTTTCGTCACGCTTAACACCATTTTGCATGATGATGAGCTGGAACCC
GCGCAACGGCTGATTACTGACCTCTACCAGACCGGTGTCGATGCGCTGATTGTTCAGGATATGGGGATTCTGGAACTTGA
TATTCCGCCGATTGAACTGCACGCCAGTACGCAGTGCGATATTCGTACAGTAGAAAAAGCGAAGTTCCTCTCTGATGTTG
GCTTCACGCAGATTGTGCTGGCGCGAGAGCTAAATCTTGAGCAGATCCGCGCGATTCACCAGGCTACGGACGCGACCATT
GAATTCTTTATTCATGGCGCATTGTGCGTGGCCTATTCGGGTCAGTGCTACATTTCTCATGCGCAAACAGGGCGTAGCGC
CAATCGTGGCGATTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGATCAGGGGCGTGTGGTTTCCTATGAAA
AACATCTGCTGTCGATGAAAGATAACGATCAGACTGCCAACCTCGGCGCGCTGATTGATGCTGGCGTACGCTCCTTCAAG
ATTGAAGGGCGTTACAAAGATATGAGCTACGTGAAGAATATCACCGCCCATTATCGTCAGATGCTGGATGCCATTATTGA
AGAACGTGGCGATCTGGCGCGCGCTTCATCAGGTCGTACTGAACATTTCTTTGTTCCATCGACGGAAAAGACTTTCCACC
GTGGTAGCACAGATTATTTTGTGAATGCCCGTAAAGGCGATATTGGCGCGTTCGATTCGCCGAAATTTATCGGCCTGCCG
GTGGGCGAAGTATTGAAAGTAGCGAAAGATCATCTCGATGTTGCCGTTACCGAGCCACTGGCAAATGGCGATGGCCTGAA
CGTGATGATTAAACGTGAAGTCGTCGGTTTTCGTGCCAATACGGTAGAGAAAACCGGAGAAAATCAGTACCGCGTCTGGC
CCAATGAAATGCCAGCAGATTTGCACAAAATTCGCCCGCATCACCCACTAAACCGAAATCTTGATCATAACTGGCAGCAG
GCACTGACAAAAACCTCCAGCGAACGCCGGGTGGCGGTAGACATTGAACTGGGCGGCTGGCAGGAACAACTGATTCTGAC
CCTCACCAGTGAAGAGGGTGTCAGCATCACACATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAA
TGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAAACCATCTATTACGCCCGCAATGTGCAAATTAATTTGCCGGGG
GCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGAAGCCGCCGATATGCTTGATGCTGCGCGTCTTGTCAG
TTACCAGCGCGGCAGCCGTAAACCGGTTGCTGATCCTGCGCCGGTTTATCCGCAAACGCATCTGAGTTTCCTCGCGAACG
TATACAACCAGAAAGCGCGTGAATTTTATCATCGCTATGGTGTGCAACTGATTGACGCGGCGTATGAGGCACATGAAGAG
AAGGGCGAAGTCCCGGTGATGATCACCAAGCATTGTCTGCGCTTTGCCTTCAATCTGTGCCCGAAACAGGCGAAAGGCAA
TATCAAAAGCTGGAAGGCGACGCCAATGCAACTGGTTAACGGCGATGAAGTATTAACGCTAAAGTTTGATTGCCGCCCAT
GCGAGATGCACGTCATTGGCAAAATCAAAAATCACATACTGAAAATGCCGTTACCGGGAAGCGTAGTGGCATCCGTAAGT
CCGGATGATCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAA

Upstream 100 bases:

>100_bases
TTCCCTCATCCATTACCCGCGCAGTTAAGCGGGAAAACTATTTCGCAACGTCGCGCTTGTGGCTAAAATAGCCGCCATTT
TTCAGCTACTGGATAAGAAA

Downstream 100 bases:

>100_bases
AACGCCAGTTTTCGGGTTACTCACCACTCATCAAATCTGCATGATATTGCCTGCCGGGTAAGGCGTCATGCCGCATCCGG
CAACAAATGACTCAACGCTG

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 652

Protein sequence:

>653_residues
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEP
AQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLEQIRAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLKVAKDHLDVAVTEPLANGDGLNVMIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQ
ALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTIYYARNVQINLPG
ALFVPNSLLNQFRREAADMLDAARLVSYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVS
PDDLLKTLPKRKG

Sequences:

>Translated_653_residues
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEP
AQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLEQIRAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLKVAKDHLDVAVTEPLANGDGLNVMIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQ
ALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTIYYARNVQINLPG
ALFVPNSLLNQFRREAADMLDAARLVSYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVS
PDDLLKTLPKRKG
>Mature_652_residues
TVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPA
QRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLEQIRAIHQATDATIE
FFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFKI
EGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPV
GEVLKVAKDHLDVAVTEPLANGDGLNVMIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQA
LTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTIYYARNVQINLPGA
LFVPNSLLNQFRREAADMLDAARLVSYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEK
GEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSP
DDLLKTLPKRKG

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=653, Percent_Identity=98.9280245022971, Blast_Score=1352, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=441, Percent_Identity=29.4784580498866, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=32.7645051194539, Blast_Score=115, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 72762; Mature: 72631

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR
CCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRTVEKAKFLSDVGFTQIVLARELNLEQIRAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGLNVMIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCC
TVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGW
CHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCC
QEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTIYYARNVQINLPG
CEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
ALFVPNSLLNQFRREAADMLDAARLVSYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAR
CEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEC
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDDLLKTLPKRKG
CCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR
CCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRTVEKAKFLSDVGFTQIVLARELNLEQIRAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGLNVMIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCC
TVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGW
CHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCC
QEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTIYYARNVQINLPG
CEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
ALFVPNSLLNQFRREAADMLDAARLVSYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAR
CEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEC
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDDLLKTLPKRKG
CCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]