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The map label for this gene is ydaM [H]

Identifier: 218689330

GI number: 218689330

Start: 1523109

End: 1524341

Strand: Reverse

Name: ydaM [H]

Synonym: ECED1_1551

Alternate gene names: 218689330

Gene position: 1524341-1523109 (Counterclockwise)

Preceding gene: 218689334

Following gene: 218689326

Centisome position: 29.26

GC content: 47.45

Gene sequence:

>1233_bases
ATGATTACACACAACTTCAATACCCTGGACTTACTCACCAGTCCTGTCTGGATCGTTTCGCCCTTTGAGGAACAGTTAAT
TTATGCCAACAGCGCGGCGCGACTGTTGATGCAAGACCTCACGTTTAGTCAGCTACGAACCGGTCCCTATTCCGTCTCCT
CACAAAAAGAACTGCCGAAATACCTCTCCGATCTGCAAAATCAACACGATATTATCGAAATCCTCACCGTTCAGCGTAAA
GAAGAGGAAACAGCATTAAGCTGTCGGCTTGTTTTGCGAGAGCTGACAGAAACAGAACCGGTGATTATTTTCGAAGGTAT
CGAAGCACCGGCAACGCTGGGTTTAAAAGCCAGTCGCTCGGCAAATTATCAGCGCAAAAAACAAGGTTTTTATGCGCGCT
TTTTTCTGACTAACTCTGCACCAATGTTGTTGATTGACCCCTCACGAGATGGCCAAATCGTCGATGCTAACCTCGCCGCG
CTCAATTTCTATGGTTATAACCATGAAACGATGTGCCAGAAACATACCTGGGAAATTAATATGCTCGGGCGTCGCGTCAT
GCCTATCATGCATGAAATCTCGCATTTACCCGGTGGTCATAAACCTTTGAATTTTGTTCATAAACTGGCGGATGGTTCGA
CTCGTCATGTGCAGACCTATGCCGGGCCGATTGAAATTTATGGTGACAAGCTCATGTTATGTATTGTGCATGATATTACT
GAGCAAAAACGGCTGGAGGAGCAACTGGAACATGCTGCCCACCATGATGCGATGACCGGATTACTGAATCGGCGACAGTT
TTATCACATTACCGAGCCAGGCCAAATGCAGCACCTCGCTATCGCTCAGGATTACAGCTTGTTGCTCATCGACACCGATC
GTTTTAAACACATTAACGATCTCTATGGGCATTCTAAAGGTGATGAGGTGTTATGCGCCCTTGCCCGCACTCTCGAAAGT
TGCGCTCGCAAAGGCGATTTGGTGTTTCGTTGGGGAGGCGAAGAGTTTGTCTTATTGCTACCAAGAACCCCACTGGATAC
CGCGCTTTCGCTGGCTGAAACTATCCGCGTAAGCGTGGCAAAAGTGAGTATTTCGAGCTTACCACGCTTTACTGTCAGCA
TTGGTGTGGCGCATCACGAAGGAAATGAAAGCATCGATGAACTGTTTAAACGCGTTGATGATGCTTTGTATCGAGCGAAA
AATGATGGACGCAACCGCGTGCTGGCGGCATAA

Upstream 100 bases:

>100_bases
TGTTAAATAGCGTCTATCATTATCAGAATTATCTGATCATATGACGTGGCTTTTTTGCGATCGGATAGCAACAAAAATTG
ATAAAAATAATGGGATCTCA

Downstream 100 bases:

>100_bases
GCCACGGATGCGTCTCGTGATCAACGACTGCGCTTAGCGTGGCACTCCCAGTTTTCTTGCTTCGCCTGCGCTGTTTTACG
TAGTGCGACGTAACACGCCC

Product: putative diguanylate cyclase, GG[D/E]EF domain signalling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRK
EEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLES
CARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISSLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK
NDGRNRVLAA

Sequences:

>Translated_410_residues
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRK
EEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLES
CARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISSLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK
NDGRNRVLAA
>Mature_410_residues
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRK
EEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLES
CARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISSLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK
NDGRNRVLAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=410, Percent_Identity=99.2682926829268, Blast_Score=849, Evalue=0.0,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=36.5269461077844, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=35.0877192982456, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=35.4651162790698, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=34.0782122905028, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=34.3373493975904, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=36.2068965517241, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788085, Length=180, Percent_Identity=30, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787541, Length=200, Percent_Identity=29, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=35, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=32.5153374233129, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=167, Percent_Identity=31.1377245508982, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=32.0987654320988, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46512; Mature: 46512

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPK
CCCCCCCHHHHHCCCEEEECCHHHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRS
HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCC
ANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEIN
CCHHHHHCCEEEEEEEECCCCEEEECCCCCCEEEECCEEEEEEECCCCHHHHHHCCEEEE
MLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEECCEEEEEEHHHHH
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHIND
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHH
LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVA
HHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHE
KVSISSLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
EEEHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPK
CCCCCCCHHHHHCCCEEEECCHHHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRS
HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCC
ANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEIN
CCHHHHHCCEEEEEEEECCCCEEEECCCCCCEEEECCEEEEEEECCCCHHHHHHCCEEEE
MLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEECCEEEEEEHHHHH
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHIND
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHH
LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVA
HHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHE
KVSISSLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
EEEHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]