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The map label for this gene is yeaM [H]

Identifier: 218689326

GI number: 218689326

Start: 1518879

End: 1519694

Strand: Reverse

Name: yeaM [H]

Synonym: ECED1_1547

Alternate gene names: 218689326

Gene position: 1519694-1518879 (Counterclockwise)

Preceding gene: 218689330

Following gene: 218689325

Centisome position: 29.17

GC content: 45.34

Gene sequence:

>816_bases
ATGACAATCACACTGCAACCCAAAGCATCACCAGGGCATCACATTATCGGACTGGATTCGGAACATCTGAATGGAGGCAC
AGTTCCCTGGCATAAACATCTCTATGCCCAGTTGCTTTACCCGGCTGAAGGAGTCGTTCGTATATGGGCTGGAGAAAGCG
TCTGGCTAGTGCATGCCAGCAGCGCTCTTTGGCTGCCCCCACAAATGCCGCATAAGTTTGTTGCGACAGGCAACGTACTT
TTAAAAACCGTACTGGTTTCAGAAGCGGAAAGTGAAACGCTGGGAAAAGTTTGCTTCATGACGGGTATTTCACCCCTGTT
AAGGGAATTACTAATTGCAATTAACCAACTTCCACCGTCGCAAAGTACCACAGATAAACAACAGTTACGTTTTTCAGCCC
TCGAGACACTGATACTTCAGGAAATAAAAATGGGGGTGAAAATGTCACTTGAACTCCCTTGGCCAAATGATGAGCGGCTA
CAGCAGCTTTGTGAGAATTTGCTAAACAACCAAGGGTATCTGCCAACACTGGATAATCTAGCGGATAAAATTAACGTCAG
TAGCCGTACACTCATGCGCTTATTTGTTAAAGAGACGGGATTAACATTTCGCCACTGGGTTCAGCAAATGCACGTTATTT
CTGCAGTGACGCTTCTTGATGATGGATATTCGTTGACCAAAATTGCCCATCGTCTGGGCTATGCCTCAGCTGAATCGTTC
GGCAATATGTTTAAGCGTCGAACGGGCTACTCACCCGGTAAATTTACTCGTCGATTAACGATGCATGATTATGCAATCAC
AAGACAAATGATTTAA

Upstream 100 bases:

>100_bases
TCATCACTCTTTACACCGTATATATCCGGAAACTTGCATACGTCATATTTAAAATTTAACATGGCTTATTTGATGATTTC
TGACAAAATACCTACTGTAA

Downstream 100 bases:

>100_bases
CTTATATTTTCGTGAAATCTGTCACTGAAGAAAATTGGCAACGGATGGGTAAAACCGTTATAACACTGTCACCGGTCACC
AGGACCCCAGGCCGGATTTA

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEGVVRIWAGESVWLVHASSALWLPPQMPHKFVATGNVL
LKTVLVSEAESETLGKVCFMTGISPLLRELLIAINQLPPSQSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERL
QQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESF
GNMFKRRTGYSPGKFTRRLTMHDYAITRQMI

Sequences:

>Translated_271_residues
MTITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEGVVRIWAGESVWLVHASSALWLPPQMPHKFVATGNVL
LKTVLVSEAESETLGKVCFMTGISPLLRELLIAINQLPPSQSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERL
QQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESF
GNMFKRRTGYSPGKFTRRLTMHDYAITRQMI
>Mature_270_residues
TITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEGVVRIWAGESVWLVHASSALWLPPQMPHKFVATGNVLL
KTVLVSEAESETLGKVCFMTGISPLLRELLIAINQLPPSQSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERLQ
QLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESFG
NMFKRRTGYSPGKFTRRLTMHDYAITRQMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=234, Percent_Identity=31.6239316239316, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30569; Mature: 30438

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEGVVRIWAGESVWLVHAS
CEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEEEEC
SALWLPPQMPHKFVATGNVLLKTVLVSEAESETLGKVCFMTGISPLLRELLIAINQLPPS
CEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
QSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHH
ADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESF
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
GNMFKRRTGYSPGKFTRRLTMHDYAITRQMI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEGVVRIWAGESVWLVHAS
EEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEEEEC
SALWLPPQMPHKFVATGNVLLKTVLVSEAESETLGKVCFMTGISPLLRELLIAINQLPPS
CEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
QSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERLQQLCENLLNNQGYLPTLDNL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHH
ADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTLLDDGYSLTKIAHRLGYASAESF
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
GNMFKRRTGYSPGKFTRRLTMHDYAITRQMI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]