Click here to switch to the map view.

The map label for this gene is ymdC [H]

Identifier: 218688999

GI number: 218688999

Start: 1192339

End: 1193760

Strand: Direct

Name: ymdC [H]

Synonym: ECED1_1190

Alternate gene names: 218688999

Gene position: 1192339-1193760 (Clockwise)

Preceding gene: 218688998

Following gene: 218689003

Centisome position: 22.89

GC content: 49.72

Gene sequence:

>1422_bases
TTGCCTCAGCTGGCGAGCGCGGTGCTGCCACTGTGTTCGCAACATCCCGGTCAGTGTGGACTTTTTCCTCTGGAGAAAAG
TCTGGATGCGTTTGCCGCCCGGTATCGTCTGGCTGAAATGGCAGAGCATACACTGGATGTTCAGTATTACATCTGGCAGG
ACGATATGTCGGGTCGGTTACTGTTTTCCGCCCTGTTAGCCGCAGCAAAGCGTGGCGTTCGCGTACGTTTGTTGCTGGAC
GACAACAATACGCCCGGACTTGATAACATTTTACGCTTGCTTGACAGCCATCCACGCATTGAAGTCCGGCTTTTTAATCC
TTTCTCGTTTCGCTTGCTACGTCCGCTTGGTTATATCACCGACTTTTCCCGTCTCAATCGCCGTATGCACAATAAAAGTT
TCACTGTCGATGGCGTGGTGACGCTGGTGGGAGGACGAAATATTGGTGATGCCTATTTTGGTGCAGGGGAAGAGCCACTT
TTTTCGGATTTAGATGTCATGGCAATAGGACCCGTGGTAGAGGACGTTGCCGATGATTTCGCCCGCTATTGGTATTGCAA
ATCGGTTTCCCCCTTACAGCAGGTGCTGGATGTCCCGGAAGGTGAAATGGCGGATCGCATCGAGTTACCGGCATCCTGGC
ATGACGATGCCATGACGCATCGTTATTTACGCAAAATGGAATCCAGTCCGTTTATAAATCATCTGGTTGATGGAACGTTG
TCGCTTATCTGGGCGAAAACACGTTTATTAAGTGATGATCCGGCGAAAGGGGAGGGCAAGGCAAAACGGCATTCACTGTT
ACCGCAGCGCCTGTTCGATATCATGGGCTCACCCAGTGAACGCATCGATATTATCTCTTCCTATTTTGTACCGACACGTG
CAGGTGTGGCGCAACTCTTACGGATGGTGAGAAAAGGGGTAAAGATTGCGATCCTAACCAATTCTCTTGCCGCTAACGAT
GTTGCTGTCGTCCATGCAGGATACGCGCGCTGGCGCAAAAAATTGCTCCGCTATGGGGTGGAATTATATGAACTCAAGCC
GACGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCAGGGGCCAGCCTGCATGCTAAAACCTTTA
GTATCGATGGTAAAACGGTGTTTATCGGCTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTT
GTGATAGAGAGCGAAACGCTGGCACAGTTAATTGATAAACGCTTTATTCAGAGCCAGTATGATGCGGCCTGGCAGCTCCG
TCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCA
GTTTCTGGAAGCGGGTTATGGTCAAACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAA

Upstream 100 bases:

>100_bases
ACCCGTCACGCTTTACCCGAACAGGTATACTTTGTCTGTTATGATGAAGAAAACGCCCACCTCTACGAAAGACTCCTTAC
CCAACAAGGAGATGAATGAT

Downstream 100 bases:

>100_bases
ACGCGACTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTCAATAATGGG
ATGCGTAAATGAATTTCATA

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MPQLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDNILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHDDAMTHRYLRKMESSPFINHLVDGTL
SLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVKLASILPVEWLL

Sequences:

>Translated_473_residues
MPQLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDNILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHDDAMTHRYLRKMESSPFINHLVDGTL
SLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVKLASILPVEWLL
>Mature_472_residues
PQLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDD
NNTPGLDNILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLF
SDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHDDAMTHRYLRKMESSPFINHLVDGTLS
LIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDV
AVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFV
IESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVKLASILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=98.9429175475687, Blast_Score=962, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=399, Percent_Identity=22.8070175438596, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53600; Mature: 53469

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDNILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHDDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
SLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVKLASILPVEWLL
CCCEEEEECCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure 
PQLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDNILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHDDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
SLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVKLASILPVEWLL
CCCEEEEECCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]