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The map label for this gene is ycdY

Identifier: 218688988

GI number: 218688988

Start: 1185633

End: 1186187

Strand: Direct

Name: ycdY

Synonym: ECED1_1179

Alternate gene names: 218688988

Gene position: 1185633-1186187 (Clockwise)

Preceding gene: 218688987

Following gene: 218688989

Centisome position: 22.76

GC content: 52.97

Gene sequence:

>555_bases
ATGAATGAGTTTTCTATCCTCTGTCGTGTGCTGGGTTCGCTCTATTACCGCCAACCGCAAGATCCTTTACTGGTGCCGTT
GTTTACCCTGATTCGTGAGGGGAAACTGGCTGCGAACTGGCCACTGGAGCAGGATGAGTTACTGACGCGTTTACAGAAAA
GCTGTGATATGACGCAAGTCTCTGCCGATTACAATGCGTTGTTTATCGGCGATGAATGTGCTGTGCCGCCATATCGTAGC
GCATGGGTTGAGGGCGCAACGGAAGCGGAAGTGCGCGCTTTTCTTTCCGAACGAGGGATGCCACTAGCGGATACGCCAGC
CGATCACATCGGCACATTGCTGCTTGCGGCTTCCTGGCTGGAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAA
CACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACTACGCCTTTCTGG
CGCACCATGGCACCGCTAACCCGCGATGCTATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAGTAA

Upstream 100 bases:

>100_bases
ATGTTTCTCCGCGCCGCTTACTTAACTTCCTTGAATCTCGCGGTATGGCACCGATTGCGGAATTTGCAGACCTTTAATTA
CTAGTAATGGAAATATATTA

Downstream 100 bases:

>100_bases
ATGTGATCTGCATCACTCATAACTGCAACGGGTAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCG
TTTTCTGCTATCATGCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRS
AWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE

Sequences:

>Translated_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRS
AWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE
>Mature_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRS
AWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family

Homologues:

Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=100, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI87081942, Length=180, Percent_Identity=30.5555555555556, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDY_ECOLI (P75915)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H64845
- RefSeq:   AP_001660.1
- RefSeq:   NP_415553.1
- ProteinModelPortal:   P75915
- SMR:   P75915
- DIP:   DIP-11519N
- STRING:   P75915
- EnsemblBacteria:   EBESCT00000003450
- EnsemblBacteria:   EBESCT00000016915
- GeneID:   945609
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1018
- KEGG:   eco:b1035
- EchoBASE:   EB3630
- EcoGene:   EG13871
- eggNOG:   COG3381
- GeneTree:   EBGT00050000011387
- HOGENOM:   HBG297249
- OMA:   ASWPLEQ
- ProtClustDB:   CLSK870286
- BioCyc:   EcoCyc:G6541-MONOMER
- Genevestigator:   P75915
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 20724; Mature: 20724

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEE
SADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWL
CCCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DSEE
CCCC
>Mature Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEE
SADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWL
CCCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DSEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503