Click here to switch to the map view.

The map label for this gene is cspH [H]

Identifier: 218688877

GI number: 218688877

Start: 1085136

End: 1085348

Strand: Reverse

Name: cspH [H]

Synonym: ECED1_1065

Alternate gene names: 218688877

Gene position: 1085348-1085136 (Counterclockwise)

Preceding gene: 218688880

Following gene: 218688861

Centisome position: 20.83

GC content: 47.42

Gene sequence:

>213_bases
TTGTCCCGTAAAATGACAGGAATTGTCAAAACCTTTGATCGCAAAAGCGGCAAAGGATTCATTATCCCCTCCGACGGTCG
TAAAGAAGTCCAGGTCCATATTTCCGCATTCACTCCCCGCGACGCAGAAGTGCTTATACCAAGATTACGCGTGGAATTTT
GCCGCGTAAATGGCCTGCGTGGACCAACAGCGGCAAATGTTTATTTGTCTTGA

Upstream 100 bases:

>100_bases
AAGCAAATTTTATTTTAGCCGTCCGGCGGTCTTAAATATCGCTGGCTTTATTTTATTAACCCCGTATAGTGCAGCGCAGT
ATTTTCAGTAAGGAATTTGT

Downstream 100 bases:

>100_bases
TGGAGAGCGCACGCTGGTATGCGTGCTTCATTCACGATTTGCGTAAAACCGGCCAACGAACACATGCCCTGCGCATTTCG
CTCTTCACATCCTGCCAGGG

Product: stress protein, member of the CspA-family

Products: NA

Alternate protein names: CSP-H [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLRGPTAANVYLS

Sequences:

>Translated_70_residues
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLRGPTAANVYLS
>Mature_69_residues
SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLRGPTAANVYLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367112, Length=70, Percent_Identity=98.5714285714286, Blast_Score=142, Evalue=6e-36,
Organism=Escherichia coli, GI1787840, Length=70, Percent_Identity=75.7142857142857, Blast_Score=113, Evalue=3e-27,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=49.2537313432836, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1787839, Length=70, Percent_Identity=45.7142857142857, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7819; Mature: 7688

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLR
CCCCCCHHEEECCCCCCCEEEEECCCCEEEEEEEEEECCCCCEEEECHHEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC
>Mature Secondary Structure 
SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLR
CCCCCHHEEECCCCCCCEEEEECCCCEEEEEEEEEECCCCCEEEECHHEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]