Click here to switch to the map view.

The map label for this gene is 218688850

Identifier: 218688850

GI number: 218688850

Start: 1058478

End: 1058825

Strand: Direct

Name: 218688850

Synonym: ECED1_1038

Alternate gene names: NA

Gene position: 1058478-1058825 (Clockwise)

Preceding gene: 218688849

Following gene: 218688851

Centisome position: 20.32

GC content: 57.18

Gene sequence:

>348_bases
ATGGTAACGAAAACCATCACTGAACAACGTGCAGAAGTACGTATTTTTGCCGGTAATGATCCGGCTCATACCGCCACAGG
CAGCAGCGGGATTTCTCAGGCAACACCGGCTCTGACGCCCCTGATGCTGGATGAAGCCACCGGGAAACTGGTGGTCTGGG
ACGGACAGAAAGCCGGTAGTGCGGCTGGCATACTGGTACTGCCGCTTGAAGGCACAGAGACGGTGCTGACCTATTACAAG
TCGGGGACCTTTGCGACGGAGGCAATCCGCTGGCCTGACAGTGTGGATGAACACAAAAAGGCCAACGCCTTTGTCGGCAC
AGCCCTGAGTCACGCGGCGCTGCCGTAA

Upstream 100 bases:

>100_bases
TGGCGTGTCACAGACGTCAGCAGACGGTGATGCGGACGTGAAAATGCTCATGGCCATGCCATGAAGTCAGTGCTGACCAT
CAATATGAGGTTTTTACAAT

Downstream 100 bases:

>100_bases
CACGTTATCAGGCCACCGCGTTGGCCTGACTGATTTCTGAATGAAAGGAACTGATTTATGGGATTGTTTACGACCCGCCA
GTTACTCGGTTATACCGAAC

Product: major capsid protein D

Products: NA

Alternate protein names: Head Decoration Protein Bacteriophage Origin; Gifsy-1 Prophage Head Protein Gpshp; Phage Head Decoration Protein; Head-DNA Stabilization X; Bacteriophage Lambda Head Decoration Protein D

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVTKTITEQRAEVRIFAGNDPAHTATGSSGISQATPALTPLMLDEATGKLVVWDGQKAGSAAGILVLPLEGTETVLTYYK
SGTFATEAIRWPDSVDEHKKANAFVGTALSHAALP

Sequences:

>Translated_115_residues
MVTKTITEQRAEVRIFAGNDPAHTATGSSGISQATPALTPLMLDEATGKLVVWDGQKAGSAAGILVLPLEGTETVLTYYK
SGTFATEAIRWPDSVDEHKKANAFVGTALSHAALP
>Mature_115_residues
MVTKTITEQRAEVRIFAGNDPAHTATGSSGISQATPALTPLMLDEATGKLVVWDGQKAGSAAGILVLPLEGTETVLTYYK
SGTFATEAIRWPDSVDEHKKANAFVGTALSHAALP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12039; Mature: 12039

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKTITEQRAEVRIFAGNDPAHTATGSSGISQATPALTPLMLDEATGKLVVWDGQKAGS
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCC
AAGILVLPLEGTETVLTYYKSGTFATEAIRWPDSVDEHKKANAFVGTALSHAALP
CCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MVTKTITEQRAEVRIFAGNDPAHTATGSSGISQATPALTPLMLDEATGKLVVWDGQKAGS
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCC
AAGILVLPLEGTETVLTYYKSGTFATEAIRWPDSVDEHKKANAFVGTALSHAALP
CCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA