Definition | Escherichia coli ED1a chromosome, complete genome. |
---|---|
Accession | NC_011745 |
Length | 5,209,548 |
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The map label for this gene is ycbC [H]
Identifier: 218688763
GI number: 218688763
Start: 977158
End: 977937
Strand: Reverse
Name: ycbC [H]
Synonym: ECED1_0950
Alternate gene names: 218688763
Gene position: 977937-977158 (Counterclockwise)
Preceding gene: 218688771
Following gene: 218688758
Centisome position: 18.77
GC content: 51.92
Gene sequence:
>780_bases ATGCTTTTTACACTGAAAAAAGTGATTGGTAATATGTTGCTGCCACTTCCGCTGATGTTGTTGATTATTGGCGCTGGCCT GGCGCTGCTGTGGTTTAGCCGTTTTCAAAAAACCGGGAAGATTTTTATTAGCATTGGGTGGCTGGCGCTCTTGTTATTGA GTTTGCAACCGATAGCCGACCGCCTGTTGCGTCCCATCGAAAGCACTTATCCGACATGGAATAATTCGCAAAAAGTGGAC TATATCGTGGTGCTCGGAGGTGGTTATACCTGGAACCCGCAGTGGGCGCCGAGCTCTAATTTAATCAATAACAGTCTGCC ACGCCTGAATGAAGGTATTCGCTTATGGCGCGAAAATCCGGGATCAAAACTGATCTTTACGGGAGGCGTAGCTAAAACCA ATACGGTGAGCACAGCCGAAGTAGGTGCCAGAGTTGCGCAATCGCTGGGCGTGCCGCGCGAGCAAATTATCACCCTGGAT TTGCCAAAAGATACCGAAGAAGAAGCTGCAGCAGTGAAACAGGCGATTGGTGACGCACCTTTCCTGCTGGTGACCTCCGC ATCACATCTGCCGCGGGCGATGATCTTTTTTCAGCAGGAAGGGTTAAATCCGCTACCAGCCCCGGCGAATCAGTTGGCCA TCGACTCGCCGCTTAATCCGTGGGAACGGGCAATCCCTTCTCCGGTTTGGTTGATGCATAGCGACCGCGTTGGCTATGAA ACGCTTGGCCGGATCTGGCAGTGGCTGAAAGGTTCGTCAGGCGAGCCACGGCAAGAGTGA
Upstream 100 bases:
>100_bases TAAAGACGCTATTTTGTCACAGCCACGGCGAGAATGAACCCGTCTGGTGTAATATCGCTGGCGATCCCTTGCTATATGGT CAAAAAAGGAACCAGAAAGG
Downstream 100 bases:
>100_bases TTTTGATGCCAGATCGAAGTTACGCCGACTAAATCGTCCGGTGTTGACCAGTTGCGCAACTTCATCCCATAACACATACA ACCAACGCCGCCAGATGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPIADRLLRPIESTYPTWNNSQKVD YIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE TLGRIWQWLKGSSGEPRQE
Sequences:
>Translated_259_residues MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPIADRLLRPIESTYPTWNNSQKVD YIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE TLGRIWQWLKGSSGEPRQE >Mature_259_residues MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPIADRLLRPIESTYPTWNNSQKVD YIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE TLGRIWQWLKGSSGEPRQE
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787150, Length=259, Percent_Identity=99.6138996138996, Blast_Score=516, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003848 - InterPro: IPR014729 [H]
Pfam domain/function: PF02698 DUF218 [H]
EC number: NA
Molecular weight: Translated: 28681; Mature: 28681
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPIAD CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH RLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENP HHHHHHHHCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHCCCHHHHHHHHHHHCCC GSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAP CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHHHHHHCCCC FLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE EEEEECCCCCCHHHEEEHHCCCCCCCCCCCCEEECCCCCHHHHHCCCCEEEEECCCCCHH TLGRIWQWLKGSSGEPRQE HHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPIAD CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH RLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENP HHHHHHHHCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHCCCHHHHHHHHHHHCCC GSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAP CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHHHHHHCCCC FLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE EEEEECCCCCCHHHEEEHHCCCCCCCCCCCCEEECCCCCHHHHHCCCCEEEEECCCCCHH TLGRIWQWLKGSSGEPRQE HHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]