Click here to switch to the map view.

The map label for this gene is ybeM [H]

Identifier: 218688449

GI number: 218688449

Start: 645403

End: 645966

Strand: Direct

Name: ybeM [H]

Synonym: ECED1_0622

Alternate gene names: 218688449

Gene position: 645403-645966 (Clockwise)

Preceding gene: 218688447

Following gene: 218688450

Centisome position: 12.39

GC content: 54.26

Gene sequence:

>564_bases
ATGATGACGACAATTCTGACGATTCATGTTCCTTCAACACCGGGGCGCGCGTGGAATATGCTGGTGGCGCTACAGGCAGG
AAACATCGTCGCCCGTTATGCCAAACTGCATCTCTATGATGCATTTGCCATTCAGGAATCACGCCATGTTGATGCTGGTA
ATGAAATAGCTCCGTTACTGGAGGTGGAAGGGATGAAGGTCGGTCTGATGACCTGTTATGACTTACGCTTTCCAGAGCTG
GCGCTGGCACAGGCATTACAGGGAGCTGAAATCCTGGTACTTCCTGCCGCCTGGGTTCGTGGGCCGCTCAAAGAGCATCA
CTGGTCAACGTTGCTTGCCGCTCGTGCGCTGGATACCACCTGTTATATGGTGGCGGCGGGGGAGTGCGGGAACAAAAATA
TCGGGCAAAGCCGGATTATAGATCCCTTTGGCGTCACCATTGCGGCAGCGTCAGAAATGCCTGCACTCATTATGGCGGAA
GTGACGCCCGAACGTGTGCGTCAGGTACGCGCGCAACTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATT
ATGA

Upstream 100 bases:

>100_bases
ACTGGCGCGTGATGATCATGATGCGGATCTTTCGGTTAAATCAGCACAGCTGCTGGAAGGCGAATTCCTCGACCGTTTAC
GGCGAGAAAGTAAACGTAAC

Downstream 100 bases:

>100_bases
TGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCT
GGTTTTTAAGGCGCGTTCTG

Product: putative amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRHVDAGNEIAPLLEVEGMKVGLMTCYDLRFPEL
ALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAE
VTPERVRQVRAQLPVLNNRRFAPPQLL

Sequences:

>Translated_187_residues
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRHVDAGNEIAPLLEVEGMKVGLMTCYDLRFPEL
ALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAE
VTPERVRQVRAQLPVLNNRRFAPPQLL
>Mature_187_residues
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRHVDAGNEIAPLLEVEGMKVGLMTCYDLRFPEL
ALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAE
VTPERVRQVRAQLPVLNNRRFAPPQLL

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI5031947, Length=178, Percent_Identity=39.8876404494382, Blast_Score=120, Evalue=6e-28,
Organism=Homo sapiens, GI297632350, Length=178, Percent_Identity=39.8876404494382, Blast_Score=120, Evalue=7e-28,
Organism=Homo sapiens, GI297632348, Length=178, Percent_Identity=39.8876404494382, Blast_Score=120, Evalue=8e-28,
Organism=Homo sapiens, GI9910460, Length=179, Percent_Identity=29.0502793296089, Blast_Score=91, Evalue=6e-19,
Organism=Escherichia coli, GI1786412, Length=166, Percent_Identity=30.1204819277108, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17556280, Length=181, Percent_Identity=35.3591160220994, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6322335, Length=197, Percent_Identity=33.502538071066, Blast_Score=103, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6323383, Length=183, Percent_Identity=31.1475409836066, Blast_Score=96, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21355835, Length=167, Percent_Identity=32.3353293413174, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17933642, Length=166, Percent_Identity=33.1325301204819, Blast_Score=80, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 20463; Mature: 20463

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRHVDAGNEIAPLL
CCEEEEEEEECCCCCCCEEEEEEEECCCEEEHHHHHHEEHHEEECCCCCCCCCCCCCCEE
EVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTT
EECCCEEEEEEEECCCCCHHHHHHHHCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHCCE
CYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRR
EEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCC
FAPPQLL
CCCCCCC
>Mature Secondary Structure
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRHVDAGNEIAPLL
CCEEEEEEEECCCCCCCEEEEEEEECCCEEEHHHHHHEEHHEEECCCCCCCCCCCCCCEE
EVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTT
EECCCEEEEEEEECCCCCHHHHHHHHCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHCCE
CYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRR
EEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCC
FAPPQLL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]