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The map label for this gene is ybbS [H]

Identifier: 218688364

GI number: 218688364

Start: 546277

End: 547203

Strand: Reverse

Name: ybbS [H]

Synonym: ECED1_0525

Alternate gene names: 218688364

Gene position: 547203-546277 (Counterclockwise)

Preceding gene: 218688373

Following gene: 218688363

Centisome position: 10.5

GC content: 52.21

Gene sequence:

>927_bases
ATGTTCGATCCAGAAACCTTGCGGACTTTCATTGCGGTTGCTGAAACAGGAAGTTTTTCAAAAGCGGCAGAACGATTATG
TAAAACCACGGCGACGATCAGTTATCGCATTAAACTTCTGGAAGAGAATACCGGAGTGGCGCTGTTTTTCCGCACGACTC
GCAGCGTGACGTTGACGGCGGCTGGCGAGCATCTACTTTGTCAGGCCAGAGACTGGCTGAGCTGGCTGGAAAGTATGCCC
AGCGAGTTACAACAGGTGAATGATGGCGTGGAACGCCAGGTGAATATCGTCATCAACAACCTGCTCTATAACCCCCAGGC
CGTTGCCAGGCTGCTGGCGTGGCTAAATGAACGTTACCCGTTTACCCAATTTCACATCTCCCGACAAATCTATATGGGCG
TCTGGGACTCGCTATTGTACGAAGGTTTTTCACTGGCTATCGGCGTCACGGGAACCGAGGCGCTGGCAAATACCTTTAGT
CTTGATCCCTTAGGATCGGTGCAATGGCGCTTTGTCATGGCGGCGGATCATCCGCTGGCGAACGTTGAAGAGCCGCTAAC
AGAAGCACAGTTGCGGCGCTTTCCGGCGGTCAATATTGAAGACAGCGCCCGCACCTTAACCAAACGCGTCGCCTGGCGAT
TGCCGGGGCAAAAAGAGATTATTGTTCCCGATATGGAAACGAAAATCGCCGCCCATCTGGCGGGCGTTGGCATTGGTTTT
TTGCCAAAATCACTTTGCCAGTCAATGCTCGATAATCAACAACTGGTCAGCCGGGTAATCCCAACGATGCGCCCTCCTTC
GCCATTGAGTCTGGCATGGCGCAAATTTGGCAGCGGCAAAGCGGTAGAAGATATTGTGACCTTGTTTACCCAGCGCAGGC
CGGAAATCAGCGGATTTTTAGAAATTTTCGGCAACCCACGCAGTTAA

Upstream 100 bases:

>100_bases
TTTAGTCCACAAATTGAACAGGGTTATCATGTAAAAATACTGATAAATCAGAGGATAAGAAAATCACGCAACTTGCGGAT
TTAAAAGGGGATACCTGAAG

Downstream 100 bases:

>100_bases
AAATCAAGTTTCCTTGCACGTTGGCGCGTAAAATAGCGCGCAAGCTGATTTGAGGTTCACTTTTTACTATGCAAGAGAGA
CACACGGAACAGGACTATCG

Product: DNA-binding transcriptional activator AllS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLCQARDWLSWLESMP
SELQQVNDGVERQVNIVINNLLYNPQAVARLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
LPKSLCQSMLDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS

Sequences:

>Translated_308_residues
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLCQARDWLSWLESMP
SELQQVNDGVERQVNIVINNLLYNPQAVARLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
LPKSLCQSMLDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS
>Mature_308_residues
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLCQARDWLSWLESMP
SELQQVNDGVERQVNIVINNLLYNPQAVARLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
LPKSLCQSMLDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS

Specific function: Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=308, Percent_Identity=99.025974025974, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1786508, Length=283, Percent_Identity=38.86925795053, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1787949, Length=275, Percent_Identity=30.9090909090909, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=25.2707581227437, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789492, Length=281, Percent_Identity=26.3345195729537, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=258, Percent_Identity=28.2945736434109, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=31.6666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34556; Mature: 34556

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEECCEEEEEE
AGEHLLCQARDWLSWLESMPSELQQVNDGVERQVNIVINNLLYNPQAVARLLAWLNERYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSLDPLGSVQWRFVMAADHPLA
CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCC
NVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHH
LPKSLCQSMLDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL
HHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
EIFGNPRS
HHCCCCCC
>Mature Secondary Structure
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEECCEEEEEE
AGEHLLCQARDWLSWLESMPSELQQVNDGVERQVNIVINNLLYNPQAVARLLAWLNERYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSLDPLGSVQWRFVMAADHPLA
CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCC
NVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHH
LPKSLCQSMLDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL
HHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
EIFGNPRS
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]