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The map label for this gene is ugpB

Identifier: 218550714

GI number: 218550714

Start: 3493439

End: 3494755

Strand: Reverse

Name: ugpB

Synonym: EFER_3425

Alternate gene names: 218550714

Gene position: 3494755-3493439 (Counterclockwise)

Preceding gene: 218550715

Following gene: 218550713

Centisome position: 76.16

GC content: 53.76

Gene sequence:

>1317_bases
ATGAAACCGTTACATTATACAGCTTCAGCACTGGCGCTCGGACTGGCGTTAATGGGGAATGCACAGGCAGTGACGACCAT
TCCGTTCTGGCATTCTATGGAAGGGGAACTGGGTAAAGAGGTGGATTCTCTGGCCCAACGTTTTAACGCCGAAAACCCGG
ATTACAAAATTGTACCGACCTATAAAGGCAACTACGAACAGAATTTAAGTGCGGGGATTGCCGCATTTCGTACCGGCAAC
GCGCCGGCTATTTTGCAGGTTTATGAAGTTGGCACCGCCACCATGATGGCGTCGAAAGCCATTAAACCGGTGTATGACGT
GTTTAAAGAAGCGGGGATTCAATTCGATGAGTCGCAGTTTGTGCCGACGGTTTCAGGTTACTACTCCGACAGCAAAACCG
GCCACTTACTCTCCCAGCCGTTCAACAGCTCGACTCCCGTTCTCTATTACAACAAAGACGCCTTCAAGAAAGCGGGGTTA
GACCCGGAACAGCCGCCGAAAACCTGGCAGGATCTGGCGGACTATGCCGCAAAACTGAAAGCCTCCGGCATGAAGTGCGG
CTACGCAAGCGGCTGGCAGGGCTGGATCCAACTGGAAAACTTTAGCGCCTGGAACGGTCTGCCGTTTGCCAGCAAAAACA
ACGGCTTTGACGGCACGGACGCGGTGCTTGAGTTCAACAAGCCGGAGCAGGTGAAACACATCGCCATGCTCGAAGAGATG
AACAAGAAGGGCGATTTCAGTTACGTCGGGCGTAAGGATGAATCCACCGAGAAGTTCTATAACGGTGATTGCGCGATGAC
GACCGCTTCTTCCGGTTCTCTTGCCAACATTCGCGAGTATGCCAAATTCAACTACGGTGTAGGCATGATGCCGTACGACG
CCGATGCGAAAGATGCGCCACAAAACGCCATTATCGGCGGGGCCAGCCTGTGGGTGATGCAGGGCAAAGATAAAGAAACT
TACACCGGCGTGGCGAAGTTCCTCGACTTCCTCGCGAAGCCAGAAAACGCTGCCGAGTGGCATCAGAAAACCGGTTATCT
GCCAATCACCAAAGCGGCGTATGACCTGACCCGTGAGCAGGGCTTTTACGAGAAAAACCCCGGGGCGGATACCGCGACGC
GTCAGATGCTGAACAAGCCGCCGTTGCCGTTCACCAAAGGGCTGCGTCTGGGCAATATGCCGCAGATCCGCGTGATTGTG
GATGAAGAGCTGGAAAGCGTGTGGACTGGTAAGAAGACGCCACAGCAGGCGCTGGATACCGCTGTTGAGCGTGGGAACCA
GTTACTGCGCCGCTTTGAGAAATCTACGAAGTCTTAA

Upstream 100 bases:

>100_bases
TAACAAAAAAGTTATTTTTCTGTAATTCGAGCATGTCATGTTACCCCGCGAGCATAAAACGCGTGAATTCGCGCATTCGG
TACAACAAGAGAGATAAACG

Downstream 100 bases:

>100_bases
CCAGTGAAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGAAAAGCGAAGCGCATCCGGCACAG
TTCAGGAATTAACCGTAATG

Product: glycerol-3-phosphate transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIV
DEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS

Sequences:

>Translated_438_residues
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIV
DEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS
>Mature_438_residues
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGN
APAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKET
YTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIV
DEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family

Homologues:

Organism=Escherichia coli, GI1789862, Length=438, Percent_Identity=100, Blast_Score=910, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UGPB_ECO57 (P0AG81)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C86012
- PIR:   C91166
- RefSeq:   NP_289998.1
- RefSeq:   NP_312326.1
- ProteinModelPortal:   P0AG81
- EnsemblBacteria:   EBESCT00000024466
- EnsemblBacteria:   EBESCT00000059465
- GeneID:   915847
- GeneID:   961433
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4822
- KEGG:   ecs:ECs4299
- GeneTree:   EBGT00050000009189
- HOGENOM:   HBG313575
- OMA:   MYDGKNS
- ProtClustDB:   PRK10974
- BioCyc:   ECOL83334:ECS4299-MONOMER
- InterPro:   IPR006059
- InterPro:   IPR006061

Pfam domain/function: PF01547 SBP_bac_1

EC number: NA

Molecular weight: Translated: 48449; Mature: 48449

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPT
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQF
CCCCCHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLK
CCCHHCCCCCCCCCCHHHCCCCCCCCEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAP
CCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQ
CCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHC
GFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDT
CCCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCCEEEEEECHHHHHHHCCCCCHHHHHHH
AVERGNQLLRRFEKSTKS
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPT
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQF
CCCCCHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLK
CCCHHCCCCCCCCCCHHHCCCCCCCCEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAP
CCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQ
CCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHC
GFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDT
CCCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCCEEEEEECHHHHHHHCCCCCHHHHHHH
AVERGNQLLRRFEKSTKS
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796