Click here to switch to the map view.

The map label for this gene is yrfD [H]

Identifier: 218550651

GI number: 218550651

Start: 3416397

End: 3417221

Strand: Reverse

Name: yrfD [H]

Synonym: EFER_3361

Alternate gene names: 218550651

Gene position: 3417221-3416397 (Counterclockwise)

Preceding gene: 218550653

Following gene: 218550650

Centisome position: 74.47

GC content: 53.7

Gene sequence:

>825_bases
TTGATATACCCGTCAGTGCGACGGGTGATAAGGAGATCATCAACTATGGCTTTCAGATCCTGGCAAATTGGGCTTCATAT
TCAACAACGCGAGGTACTGGCTGTTGCCGTAATTCGCGGCGCTTCTGGTTGGTTTCTGCAACGCTGGTGGCGGATGCCAC
TGGCAGAAAACATTATCAAAGATGGGCATATCCGCCACCCCGAAATGCTCGCCCAGGCGCTTCAGGCATGGAGCCGTGAA
CTACCACATCGGCATCGTATCTGCCTTGCCTTTCCCGCCAGTAGAACACTACAAAAGGTATTTCCTCGCCCGGCGATGTC
ATTACGTGAACGTGAGCAGAGCGCATGGCTGGCAGGTTCAATGGCACGTGAGTTGGATATGGATCCGGACTCACTGCGCT
TTGATTATAACGAAGACACCTTAAATCCGGCTTTTAACGTGACTGCTGCGCAAAGTAAAGAAGTGGCAACACTCCTGACA
CTGGCACAAACGCTACGCATCCAGTTGGCAGCGATAACCCCGGATGCCTGCGCCTTACAACGATTCCTTCCCCGGTTAGC
ACCGCAGCAACAATGCCTGGCGTGGCGCGACGATGAACAATGGTTATGGGCAACGCGGTACGCCTGGGGGCGCAAATCGA
CAACAGAAGTCGCTTCTCTGGAACAACTGACTGCGTTATTGGCACTTCCTGTAGGCAGCATAGCGATTTGTGGCGAAGGG
GGGATAAATCCCTGGGATAGTGTTGCGCTGCGTCAACCTCCAGCTCCTCCGGCAGGTGGTGATTTTGCCATCGCCCTTGG
ATTGGCTTTGGGAGAGATGCACTAA

Upstream 100 bases:

>100_bases
TCAAAAAATACTTTACGAACTTCACTGGAGATTTCCCATTTAGTTTCATTTGGGCAGTTTATAAACAAAAGCGCCGTAGT
ATAAAGGCAAGCCTGACGCA

Downstream 100 bases:

>100_bases
TGGATATGCCCGTTAATTTTCTTCCCTGGAGACAAACGCGCAGAAAGGCCACTCTCCGCTTGTGGAGCATGATGTTCGGC
GGAGCACTGGTGCTGATCTC

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MIYPSVRRVIRRSSTMAFRSWQIGLHIQQREVLAVAVIRGASGWFLQRWWRMPLAENIIKDGHIRHPEMLAQALQAWSRE
LPHRHRICLAFPASRTLQKVFPRPAMSLREREQSAWLAGSMARELDMDPDSLRFDYNEDTLNPAFNVTAAQSKEVATLLT
LAQTLRIQLAAITPDACALQRFLPRLAPQQQCLAWRDDEQWLWATRYAWGRKSTTEVASLEQLTALLALPVGSIAICGEG
GINPWDSVALRQPPAPPAGGDFAIALGLALGEMH

Sequences:

>Translated_274_residues
MIYPSVRRVIRRSSTMAFRSWQIGLHIQQREVLAVAVIRGASGWFLQRWWRMPLAENIIKDGHIRHPEMLAQALQAWSRE
LPHRHRICLAFPASRTLQKVFPRPAMSLREREQSAWLAGSMARELDMDPDSLRFDYNEDTLNPAFNVTAAQSKEVATLLT
LAQTLRIQLAAITPDACALQRFLPRLAPQQQCLAWRDDEQWLWATRYAWGRKSTTEVASLEQLTALLALPVGSIAICGEG
GINPWDSVALRQPPAPPAGGDFAIALGLALGEMH
>Mature_274_residues
MIYPSVRRVIRRSSTMAFRSWQIGLHIQQREVLAVAVIRGASGWFLQRWWRMPLAENIIKDGHIRHPEMLAQALQAWSRE
LPHRHRICLAFPASRTLQKVFPRPAMSLREREQSAWLAGSMARELDMDPDSLRFDYNEDTLNPAFNVTAAQSKEVATLLT
LAQTLRIQLAAITPDACALQRFLPRLAPQQQCLAWRDDEQWLWATRYAWGRKSTTEVASLEQLTALLALPVGSIAICGEG
GINPWDSVALRQPPAPPAGGDFAIALGLALGEMH

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=68.7258687258687, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30848; Mature: 30848

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYPSVRRVIRRSSTMAFRSWQIGLHIQQREVLAVAVIRGASGWFLQRWWRMPLAENIIK
CCCHHHHHHHHHHCHHEEEEEEEEEEECHHHEEEEHHHHCCCCHHHHHHHHCCHHHHHHH
DGHIRHPEMLAQALQAWSRELPHRHRICLAFPASRTLQKVFPRPAMSLREREQSAWLAGS
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
MARELDMDPDSLRFDYNEDTLNPAFNVTAAQSKEVATLLTLAQTLRIQLAAITPDACALQ
HHHHCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHEEEEEECCHHHHHH
RFLPRLAPQQQCLAWRDDEQWLWATRYAWGRKSTTEVASLEQLTALLALPVGSIAICGEG
HHHHHCCCHHHHHCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
GINPWDSVALRQPPAPPAGGDFAIALGLALGEMH
CCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIYPSVRRVIRRSSTMAFRSWQIGLHIQQREVLAVAVIRGASGWFLQRWWRMPLAENIIK
CCCHHHHHHHHHHCHHEEEEEEEEEEECHHHEEEEHHHHCCCCHHHHHHHHCCHHHHHHH
DGHIRHPEMLAQALQAWSRELPHRHRICLAFPASRTLQKVFPRPAMSLREREQSAWLAGS
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
MARELDMDPDSLRFDYNEDTLNPAFNVTAAQSKEVATLLTLAQTLRIQLAAITPDACALQ
HHHHCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHEEEEEECCHHHHHH
RFLPRLAPQQQCLAWRDDEQWLWATRYAWGRKSTTEVASLEQLTALLALPVGSIAICGEG
HHHHHCCCHHHHHCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
GINPWDSVALRQPPAPPAGGDFAIALGLALGEMH
CCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]