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The map label for this gene is slyD [H]

Identifier: 218550610

GI number: 218550610

Start: 3378891

End: 3379481

Strand: Reverse

Name: slyD [H]

Synonym: EFER_3319

Alternate gene names: 218550610

Gene position: 3379481-3378891 (Counterclockwise)

Preceding gene: 218550611

Following gene: 218550608

Centisome position: 73.65

GC content: 54.82

Gene sequence:

>591_bases
ATGAAAGTAGCAAAAGACCTGGTGGTCAGCCTGGCCTATCAGGTACGTACAGAAGACGGTGTATTGGTTGATGAGTCTCC
GGTGAGTGCGCCGCTGGACTACCTGCATGGTCACGGTTCTCTGATCTCTGGCCTGGAAACAGCGCTGGAAGGTCATGAAG
TTGGCGACAAATTTGACGTAGCTGTTAGCGCGGATAACGCTTACGGGCAGTACGACGAAAACCTGGTGCAGCGCGTTCCT
AAAGATGTATTTATGGGCGTTGATGAACTGCAGGTAGGTATGCGCTTCCTGGCTGAAACCGACCAGGGTCCGGTACCGGT
TGAAATCACTGCGGTTGAAGACGATCACGTCGTGGTTGATGGTAACCACATGCTGGCCGGTCAGAACCTGAAATTCAACG
TTGAAGTTGTGGCGATTCGCGAAGCGACCGAAGAAGAACTGGCTCATGGCCACGTTCACGGTGCGCACGATCATCACCAC
GATCACGACCACGACGGTTGCTGCGGTGGTCATGGCCACGATCACGGTCATGAGCACGGTGGCGAAGGCTGCTGTGGCGG
TAAAGGTAACGGCGGTTGCGGTTGCCACTAA

Upstream 100 bases:

>100_bases
GACTAGCGATATGCGCCGAGATTTTTTAAGCTAGTGAGTACACGGCTGCAGAATTCCGCTACAATCTGCGCCACTATTCT
TCCCATGCTCAGGAGATATC

Downstream 100 bases:

>100_bases
TACCGAAAAAGTGACAAAAAAGCGGGGAATCCCCGCTTTTTTTATGCCTCAATAATGTGGCGGTGGCGTTTCTTCAGCCT
GCGACGCGATGTTCGACGGC

Product: FKBP-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVSADNAYGQYDENLVQRVP
KDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH

Sequences:

>Translated_196_residues
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVSADNAYGQYDENLVQRVP
KDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH
>Mature_196_residues
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVSADNAYGQYDENLVQRVP
KDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=196, Percent_Identity=98.469387755102, Blast_Score=382, Evalue=1e-108,
Organism=Escherichia coli, GI1786211, Length=135, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 20883; Mature: 20883

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV
CCHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEE
AVSADNAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVD
EEECCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEC
GNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHG
CCEEEECCCEEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GEGCCGGKGNGGCGCH
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV
CCHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEE
AVSADNAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVD
EEECCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEC
GNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHG
CCEEEECCCEEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GEGCCGGKGNGGCGCH
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]