Click here to switch to the map view.

The map label for this gene is yfdM [C]

Identifier: 218550044

GI number: 218550044

Start: 2792064

End: 2792621

Strand: Direct

Name: yfdM [C]

Synonym: EFER_2729

Alternate gene names: 218550044

Gene position: 2792064-2792621 (Clockwise)

Preceding gene: 218550043

Following gene: 218550045

Centisome position: 60.85

GC content: 48.57

Gene sequence:

>558_bases
ATGACTGATTTCACCGGAAGCAATACTCCTGCCGAACATCGCGACAGCTGGCGCACACCACCAGAGATTTTTGCTGCGCT
GAATGCAGAGTTCGATTTTCAACTTGATGCTGCAGCCAACGAAAAAAACCGACTATGTCGGCTTTTTATCTCACAGGAGC
AGAACACATTAACCACTTCATGGCCTGAAGCAATGGGATATGCCTCTGGTTATGTCTGGTTGAATCCACCATACAGCAAT
ATTTCCCCTTTTGTGAAAAAGGCAGCCACTGAAAACAAATTCAGTAGTGTGGGATGTGTAATGTTATTGCCTGCTGACAC
ATCTGTCGGATGGTTTCATGAAGCGATACAAACCGCCAGTGAGGTCAGATTCATCACGGCAGGACGACTGGCATTTATTA
ACCCACTCACCGGGAAACCCGTCAGTGGAAATAATAAAGGCTCGATGCTCATTATCTGGCACCCATACCCCCGTACACAC
TGCCACTTTACGACCGTTGATCGTGGCGAGTTGATGGCGTTCGGCTCAAGGATTCTTGCCCGTCGGGAGGCTGCATGA

Upstream 100 bases:

>100_bases
GTTACAAAGCGAGGCTGGGTATTTCCCGGCCTTTCTGTTATCAGAAATCCACTGAAAGCACAGCGGCTGGCTGAGGAGAT
AAATAATAAACGGGGGCTGT

Downstream 100 bases:

>100_bases
CAACCACGGAATGCATTTTTCTGGCAGCGGGCTTCATATTCTGCGTGCTTATGCTTGCCGACATGGGGCTTGTTCAATGA
CACCTCAGCAGGAAAACACC

Product: DNA N-6-adenine-methyltransferase from phage origin

Products: NA

Alternate protein names: DNA N-6-Adenine-Methyltransferase; DNA N-6-Adenine-Methyltransferase Phage Origin; DNA Methylase; Methyltransferase; Bacteriophage DNA Methyltransferase; Site-Specific DNA-Methyltransferase; DNA Adenine Methylase; Phage DNA Methyltransferase

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTDFTGSNTPAEHRDSWRTPPEIFAALNAEFDFQLDAAANEKNRLCRLFISQEQNTLTTSWPEAMGYASGYVWLNPPYSN
ISPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTASEVRFITAGRLAFINPLTGKPVSGNNKGSMLIIWHPYPRTH
CHFTTVDRGELMAFGSRILARREAA

Sequences:

>Translated_185_residues
MTDFTGSNTPAEHRDSWRTPPEIFAALNAEFDFQLDAAANEKNRLCRLFISQEQNTLTTSWPEAMGYASGYVWLNPPYSN
ISPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTASEVRFITAGRLAFINPLTGKPVSGNNKGSMLIIWHPYPRTH
CHFTTVDRGELMAFGSRILARREAA
>Mature_184_residues
TDFTGSNTPAEHRDSWRTPPEIFAALNAEFDFQLDAAANEKNRLCRLFISQEQNTLTTSWPEAMGYASGYVWLNPPYSNI
SPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTASEVRFITAGRLAFINPLTGKPVSGNNKGSMLIIWHPYPRTHC
HFTTVDRGELMAFGSRILARREAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20617; Mature: 20486

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFTGSNTPAEHRDSWRTPPEIFAALNAEFDFQLDAAANEKNRLCRLFISQEQNTLTTS
CCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCEEECC
WPEAMGYASGYVWLNPPYSNISPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTAS
CHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
EVRFITAGRLAFINPLTGKPVSGNNKGSMLIIWHPYPRTHCHFTTVDRGELMAFGSRILA
HEEEEEECCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
RREAA
HHCCC
>Mature Secondary Structure 
TDFTGSNTPAEHRDSWRTPPEIFAALNAEFDFQLDAAANEKNRLCRLFISQEQNTLTTS
CCCCCCCCCHHHCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCEEECC
WPEAMGYASGYVWLNPPYSNISPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTAS
CHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
EVRFITAGRLAFINPLTGKPVSGNNKGSMLIIWHPYPRTHCHFTTVDRGELMAFGSRILA
HEEEEEECCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
RREAA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA