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The map label for this gene is ybdF [H]

Identifier: 218549846

GI number: 218549846

Start: 2593482

End: 2593850

Strand: Direct

Name: ybdF [H]

Synonym: EFER_2530

Alternate gene names: 218549846

Gene position: 2593482-2593850 (Clockwise)

Preceding gene: 218549845

Following gene: 218549847

Centisome position: 56.52

GC content: 46.61

Gene sequence:

>369_bases
ATGGATAAGCAATCACTGCACGAAACGGCGAAACGCCTGGCCCTTGAGTTACCCTTTGTCGAGCTTTGCTGGCCTTTTGG
CCCGGAGTTCGATGTCTTTAAAATTGGCGGCAAGATTTTTATGCTGTCGTCGGAGCTGCGCGGCGTCCCCTTTATCAATT
TGAAGTCCGATCCACAAAAATCCCTGTTAAATCAGCAGATATATCCGAGCATTAAGCCAGGGTATCACATGAATAAGAAG
CACTGGATTTCAGTGTATCCAGGCGATGAGATCTCCGAAGCGTTACTGCGCGATCTTATCGATGATTCATGGAATTTAGT
GGTTGATGGCTTATCTAAACGCGATCAAAAAAGAGTGCGCCCAGACTAA

Upstream 100 bases:

>100_bases
TTTATCTGGCAACGCTGGTTCTCACTGGCGGATTAAACGTCGATTATCGCCGTACTTCACGGCATACTTTGCTTATTCTC
CTTCGCCTAAAGGAACGTTT

Downstream 100 bases:

>100_bases
AAGCGAAAATCTATAGCGCATTTTTCTCACTTACCATTTCTCGTTGAACCTTGTAATCTGCTGGCACGCAAAATTACATA
CACATGGAGTCTTTATGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGDEISEALLRDLIDDSWNLVVDGLSKRDQKRVRPD

Sequences:

>Translated_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGDEISEALLRDLIDDSWNLVVDGLSKRDQKRVRPD
>Mature_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGDEISEALLRDLIDDSWNLVVDGLSKRDQKRVRPD

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=121, Percent_Identity=97.5206611570248, Blast_Score=245, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14111; Mature: 14111

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGDEISEALLRDLIDDSWNLVVDGLSKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
PD
CC
>Mature Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGDEISEALLRDLIDDSWNLVVDGLSKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
PD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]