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The map label for this gene is pduB [H]

Identifier: 218549342

GI number: 218549342

Start: 2061724

End: 2062533

Strand: Direct

Name: pduB [H]

Synonym: EFER_2009

Alternate gene names: 218549342

Gene position: 2061724-2062533 (Clockwise)

Preceding gene: 218549341

Following gene: 218549343

Centisome position: 44.93

GC content: 55.43

Gene sequence:

>810_bases
ATGAGTAGCAATGAACTGGTGGAACAGATCATGGCACAGGTAATCGCCCGCGTGGCGACGCCGGAACAAACGGTTACCCC
TGATACCCCACAAACCAAACGAGAGACGGCTATGGCAGGAAAATGCAGTTTAACGGAATTTGTTGGCACCGCCATTGGCG
ACACTGTAGGTCTGGTGATTGCCAATGTTGATAGCGCATTGCTCGACGCAATGAAACTGGAGAAGCGCTATCGCTCTATT
GGCATCCTGGGGGCCAGGGTCGGCGCGGGTCCTCATATCATGGCGGCAGACGAAGCCGTTAAAGCAACAAATACCGAAGT
GATTAGTATCGAGCTTCCTCGCGACACCAAAGGCGGCGCTGGTCACGGTTCGCTGATCCTGTTAGGTGGCAATGATGTTT
CCGATGTGAAACGCGGAATCGAAGTCGCACTGAAAGAGCTGGATCGCACCTTTGGTGATGTTTATGCCAACGAAGCCGGC
CACCTCGAACTGCAATATACCGCCCGCGCCAGCTATGCGCTGGAAAAAGCCTTTGGTACCCCCCTGGGCCGTGCATGTGG
CGTGATTGTTGGCGCTCCGGCATCCGTCGGCGTGTTAATGGCAGACACAGCACTTAAATCCGCCAACGTTGATGTGGTGG
CGTACAGCTCCCCCGCCAAAGGCACCAGCTACAGCAACGAAGTCATTCTGGTGATTTCCGGTGACTCCGGCGCCGTACGT
CAGGCCGTCATTTCTGCCCGTGAAATCGGCAAAACCGTGCTGGCGACGCTGGGTTCAGAACCGAAAAACGATCGTCCGTC
CTACATCTGA

Upstream 100 bases:

>100_bases
GTTCTGCCGCCGCACGCAATGTAGGCGAAGTTAAAGCTGTTCACGTCATCCCACGCCCTCACACCGACGTAGAAAAAATC
TTACCGAAGGGAATTAACCC

Downstream 100 bases:

>100_bases
TATCCGTGAGGCAGTTTCATGAGATCGAAAAGATTTGAAGCACTGGCAAAACGCCCCGTAAATCAGGACGGTTTTGTTAA
GGAGTGGATCGAAGAAGGCT

Product: Propanediol utilization protein: polyhedral bodies pduB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSSNELVEQIMAQVIARVATPEQTVTPDTPQTKRETAMAGKCSLTEFVGTAIGDTVGLVIANVDSALLDAMKLEKRYRSI
GILGARVGAGPHIMAADEAVKATNTEVISIELPRDTKGGAGHGSLILLGGNDVSDVKRGIEVALKELDRTFGDVYANEAG
HLELQYTARASYALEKAFGTPLGRACGVIVGAPASVGVLMADTALKSANVDVVAYSSPAKGTSYSNEVILVISGDSGAVR
QAVISAREIGKTVLATLGSEPKNDRPSYI

Sequences:

>Translated_269_residues
MSSNELVEQIMAQVIARVATPEQTVTPDTPQTKRETAMAGKCSLTEFVGTAIGDTVGLVIANVDSALLDAMKLEKRYRSI
GILGARVGAGPHIMAADEAVKATNTEVISIELPRDTKGGAGHGSLILLGGNDVSDVKRGIEVALKELDRTFGDVYANEAG
HLELQYTARASYALEKAFGTPLGRACGVIVGAPASVGVLMADTALKSANVDVVAYSSPAKGTSYSNEVILVISGDSGAVR
QAVISAREIGKTVLATLGSEPKNDRPSYI
>Mature_268_residues
SSNELVEQIMAQVIARVATPEQTVTPDTPQTKRETAMAGKCSLTEFVGTAIGDTVGLVIANVDSALLDAMKLEKRYRSIG
ILGARVGAGPHIMAADEAVKATNTEVISIELPRDTKGGAGHGSLILLGGNDVSDVKRGIEVALKELDRTFGDVYANEAGH
LELQYTARASYALEKAFGTPLGRACGVIVGAPASVGVLMADTALKSANVDVVAYSSPAKGTSYSNEVILVISGDSGAVRQ
AVISAREIGKTVLATLGSEPKNDRPSYI

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4816

COG function: function code E; Ethanolamine utilization protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EutL/PduB family [H]

Homologues:

Organism=Escherichia coli, GI1788780, Length=178, Percent_Identity=30.8988764044944, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009193
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 27943; Mature: 27812

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNELVEQIMAQVIARVATPEQTVTPDTPQTKRETAMAGKCSLTEFVGTAIGDTVGLVI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEE
ANVDSALLDAMKLEKRYRSIGILGARVGAGPHIMAADEAVKATNTEVISIELPRDTKGGA
ECHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCHHHHCCCCEEEEEECCCCCCCCC
GHGSLILLGGNDVSDVKRGIEVALKELDRTFGDVYANEAGHLELQYTARASYALEKAFGT
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCC
PLGRACGVIVGAPASVGVLMADTALKSANVDVVAYSSPAKGTSYSNEVILVISGDSGAVR
CCHHHCCEEEECCCCCCEEEEHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHH
QAVISAREIGKTVLATLGSEPKNDRPSYI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SSNELVEQIMAQVIARVATPEQTVTPDTPQTKRETAMAGKCSLTEFVGTAIGDTVGLVI
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEE
ANVDSALLDAMKLEKRYRSIGILGARVGAGPHIMAADEAVKATNTEVISIELPRDTKGGA
ECHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCHHHHCCCCEEEEEECCCCCCCCC
GHGSLILLGGNDVSDVKRGIEVALKELDRTFGDVYANEAGHLELQYTARASYALEKAFGT
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCC
PLGRACGVIVGAPASVGVLMADTALKSANVDVVAYSSPAKGTSYSNEVILVISGDSGAVR
CCHHHCCEEEECCCCCCEEEEHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHH
QAVISAREIGKTVLATLGSEPKNDRPSYI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609 [H]