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The map label for this gene is clpV1 [H]

Identifier: 218549305

GI number: 218549305

Start: 2016057

End: 2018783

Strand: Reverse

Name: clpV1 [H]

Synonym: EFER_1967

Alternate gene names: 218549305

Gene position: 2018783-2016057 (Counterclockwise)

Preceding gene: 218549306

Following gene: 218549304

Centisome position: 43.99

GC content: 58.42

Gene sequence:

>2727_bases
ATGATTCAGATTGATTTAGCTGCACTGGTTAAGCGCCTTAACCCGTTCACCAAACAGGCGCTGGAAATGGCGGCTTCAGA
ATGCATGAGCCAGCAGTCGGCAGAAATTACCGTCAGCCATGTGCTTATTCAGATGCTCGCCATACCGCGAAGCGATCTGC
GGGTTATTACAGAGCAGGTGGACATTACCGTGGACACGCTACGCCAGTCGTTAACAGAGGAGCGCTATGCCACTGTACGA
ATGGCAGACGGCTACCCGGCATTTTCTCCGATGCTGGTTGAATGGCTGAAAGAGGGCTGGCTGCTGGCCTCCGCAGAGAT
GCAGCACAACGAACTGCGTGGCGGTGTACTGTTGCTGGCGCTTCTGCACTCGCCGTTGCGTTATGTTCCGCCCGCCGTTG
CCCGACTGCTGACCGGCATTAACCGCGACCGCCTGCAACAGGATTTTGCGCAGTGGACGCGCGAGTCAGCAGAAACCGCG
ATGCGGAATGCTGACGGTCAGACCATGAATACGATGGTGGATACAGGGGACAGCCTGCTTGCCCGCTACGCCAAAAACAT
GACCGCAGACGCCCGTAACGGCAGGCTTGACCCGGTACTGTGCCGCGACCACGAAATCGACCTGATGCTCGACATTCTCT
GCCGCCGCCGTAAAAACAATCCGGTAGTGGTGGGTGAAGCAGGCGTGGGTAAAAGCGCGCTGATTGAAGGGCTGGCGCTG
CGCATCGTGGCAGGCCAGGTGCCGGACAAGCTGAAAAACACCGATATCATGACCCTTGACCTGGGTGCATTACAGGCCGG
GGCATCGGTGAAGGGCGAATTCGAAAAACGCTTCAAGGGGCTGATGGCGGAGGTTATTTCCTCCCCGGTGCCGGTCATTC
TGTTTATCGACGAAGCACATACCCTGATTGGCGCGGGCAACCAGCAGGGTGGGCTGGATATCTCCAACCTGCTGAAACCA
GCGCTGGCGCGCGGCGAACTGAAAACCATCGCCGCCACCACATGGAGCGAATACAAAAAATACTTCGAGAAAGACGCCGC
CCTGTCGCGCCGCTTCCAGTTGGTGAAGGTCAGCGAACCCAACGCCGCCGAAGCCACCATTATTCTGCGCGGTCTGTCGG
CGGTCTATGAACAGTCTCACGGCGTGCTGATTGATGATGACGCCTTGCAGGCCGCTGCGACATTAAGTGAGCGTTATCTC
TCCGGGCGTCAGTTGCCGGACAAAGCCATTGATGTGCTGGATACCGCCTGCGCCCGCGTGGCCATCAACCTGTCATCGCC
GCCGAAGCAAATCTCGGTGCTGACCACTCTGAGCCACCAGCAGGAGGCGGAAATTCGCCAGCTTGAGCGCGAGCTTCGCA
TCGGGCTGCGTACCGACACCTCACGGATGACCGAGGTACTGGTGCAGTATGATGAAACACTGGCGGCGCTGGATGAACTG
GAAGCGGCCTGGCACCAGCAGCAGACGCTGGTACGGGAAATTATCGCGCTGCGCCAGCAGTTACTGGGCGTGGATGCCAT
GGAGGATACGCCGTCAGAGTCAGAACAGGATAATACCGATGCTGAATCGACTGATGATGCTGGCAGCACACAGCCTGAAG
AGACCGCTGAAACAGTTTCCCCGGTGCAGAGGCTGACCCAGCTCACCGCCGAACTGGACACCCTGCATAACGACCGGTTG
CTGGTTTCCCCGCATGTCGATAAAAAACAGATTGCGGCGGTGATTGCCGAATGGACTGGCGTTCCGCTTAACCGCCTGTC
GCAGAATGAAATGTCGGTCATCACCGACCTGCCGAAGTGGCTTGGTGACACCATCAAAGGACAGGACCTGGCGATTGCCA
GCCTGCATAAACACCTGCTGACTGCACGCGCCGACCTGCGCCGTCCGGGACGCCCGCTGGGCGCGTTCCTGCTGGCCGGC
CCCAGCGGCGTGGGTAAAACCGAAACCGTCCTGCAACTGGCAGAACTGCTCTACGGCGGTCGCCAGTATCTGACCACCAT
CAATATGTCCGAGTTCCAGGAGAAGCACACCGTCTCGCGGCTGATTGGTTCCCCTCCGGGCTATGTCGGGTATGGTGAAG
GCGGCGTGCTGACCGAAGCGATTCGCCAGAAACCTTATTCTGTGGTGTTGCTCGACGAAGTGGAAAAAGCGCACCCGGAT
GTGCTTAACCTGTTCTACCAGGCGTTCGACAAGGGCGAGATGGCAGACGGCGAAGGCCGCCTGATTGACTGTAAAAACAT
CGTCTTCTTCCTCACCTCCAACCTCGGCTATCAGGTGATTGTCGAACACGCCGGTGACCCAGAAACCATGCAGGAAGCCC
TGTATCCGGTGCTGGCGGACTTCTTTAAACCTGCCCTGCTGGCGCGTATGGAAGTGGTGCCGTACCTGCCGCTGTCGAAA
GAGACGCTCGCCACCATCATTGCCGGGAAACTCACCCGTCTGGATAACGTGCTGCGCAGCCGCTTTGGTGCAGAAGTGAT
TATTGAACCGGAAGTAACGGACGAAATCATGAGCCGCGTCACCCGCGCGGAAAACGGCGCGAGGATGCTCGAATCGGTCA
TCGACGGCGACATGCTGCCGCCGCTCTCCCTGCTGCTGTTGCAGAAAATGGCGGCCAACACGGCGATTGCCCGGATTCGT
CTGTCGGCGGCAGACGGTGCATTCACGGCAGACGTGGAAGATGCTCAGAACGACGAGTCCGTCACAGAGGATGAAGCTGT
TTTATGA

Upstream 100 bases:

>100_bases
TGCTGGCGCTGTTTTATCTGTTTTACCTGCTCCGCCTGGACAGTCAGACACAGGATATTCTTCACCAGTTAAACCGGCTG
CTTGCCAGGTAAGGATACAT

Downstream 100 bases:

>100_bases
GCAGGTTGCGCGTTTTCCGGCAGACAGGATGGTTTATCGCGGGCCTGATGGTGGGCTTACCCGCCAGTGCCGCGACCGCA
GAGACATCATCAATGGCTGG

Product: ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 908; Mature: 908

Protein sequence:

>908_residues
MIQIDLAALVKRLNPFTKQALEMAASECMSQQSAEITVSHVLIQMLAIPRSDLRVITEQVDITVDTLRQSLTEERYATVR
MADGYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLALLHSPLRYVPPAVARLLTGINRDRLQQDFAQWTRESAETA
MRNADGQTMNTMVDTGDSLLARYAKNMTADARNGRLDPVLCRDHEIDLMLDILCRRRKNNPVVVGEAGVGKSALIEGLAL
RIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKP
ALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYL
SGRQLPDKAIDVLDTACARVAINLSSPPKQISVLTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLAALDEL
EAAWHQQQTLVREIIALRQQLLGVDAMEDTPSESEQDNTDAESTDDAGSTQPEETAETVSPVQRLTQLTAELDTLHNDRL
LVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAG
PSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPD
VLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAGDPETMQEALYPVLADFFKPALLARMEVVPYLPLSK
ETLATIIAGKLTRLDNVLRSRFGAEVIIEPEVTDEIMSRVTRAENGARMLESVIDGDMLPPLSLLLLQKMAANTAIARIR
LSAADGAFTADVEDAQNDESVTEDEAVL

Sequences:

>Translated_908_residues
MIQIDLAALVKRLNPFTKQALEMAASECMSQQSAEITVSHVLIQMLAIPRSDLRVITEQVDITVDTLRQSLTEERYATVR
MADGYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLALLHSPLRYVPPAVARLLTGINRDRLQQDFAQWTRESAETA
MRNADGQTMNTMVDTGDSLLARYAKNMTADARNGRLDPVLCRDHEIDLMLDILCRRRKNNPVVVGEAGVGKSALIEGLAL
RIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKP
ALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYL
SGRQLPDKAIDVLDTACARVAINLSSPPKQISVLTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLAALDEL
EAAWHQQQTLVREIIALRQQLLGVDAMEDTPSESEQDNTDAESTDDAGSTQPEETAETVSPVQRLTQLTAELDTLHNDRL
LVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAG
PSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPD
VLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAGDPETMQEALYPVLADFFKPALLARMEVVPYLPLSK
ETLATIIAGKLTRLDNVLRSRFGAEVIIEPEVTDEIMSRVTRAENGARMLESVIDGDMLPPLSLLLLQKMAANTAIARIR
LSAADGAFTADVEDAQNDESVTEDEAVL
>Mature_908_residues
MIQIDLAALVKRLNPFTKQALEMAASECMSQQSAEITVSHVLIQMLAIPRSDLRVITEQVDITVDTLRQSLTEERYATVR
MADGYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLALLHSPLRYVPPAVARLLTGINRDRLQQDFAQWTRESAETA
MRNADGQTMNTMVDTGDSLLARYAKNMTADARNGRLDPVLCRDHEIDLMLDILCRRRKNNPVVVGEAGVGKSALIEGLAL
RIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKP
ALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYL
SGRQLPDKAIDVLDTACARVAINLSSPPKQISVLTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLAALDEL
EAAWHQQQTLVREIIALRQQLLGVDAMEDTPSESEQDNTDAESTDDAGSTQPEETAETVSPVQRLTQLTAELDTLHNDRL
LVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAG
PSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPD
VLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAGDPETMQEALYPVLADFFKPALLARMEVVPYLPLSK
ETLATIIAGKLTRLDNVLRSRFGAEVIIEPEVTDEIMSRVTRAENGARMLESVIDGDMLPPLSLLLLQKMAANTAIARIR
LSAADGAFTADVEDAQNDESVTEDEAVL

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=321, Percent_Identity=31.7757009345794, Blast_Score=157, Evalue=4e-38,
Organism=Escherichia coli, GI1788943, Length=701, Percent_Identity=40.5135520684736, Blast_Score=495, Evalue=1e-141,
Organism=Escherichia coli, GI1787109, Length=484, Percent_Identity=33.6776859504132, Blast_Score=241, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6320464, Length=714, Percent_Identity=38.0952380952381, Blast_Score=431, Evalue=1e-121,
Organism=Saccharomyces cerevisiae, GI6323002, Length=697, Percent_Identity=35.5810616929699, Blast_Score=414, Evalue=1e-116,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 99824; Mature: 99824

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIDLAALVKRLNPFTKQALEMAASECMSQQSAEITVSHVLIQMLAIPRSDLRVITEQV
CEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHH
DITVDTLRQSLTEERYATVRMADGYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLA
HHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
LLHSPLRYVPPAVARLLTGINRDRLQQDFAQWTRESAETAMRNADGQTMNTMVDTGDSLL
HHHCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHH
ARYAKNMTADARNGRLDPVLCRDHEIDLMLDILCRRRKNNPVVVGEAGVGKSALIEGLAL
HHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
RIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAH
HHHHCCCCHHHCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
TLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEP
HHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCC
NAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARV
CCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHE
AINLSSPPKQISVLTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLAALDEL
EEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
EAAWHQQQTLVREIIALRQQLLGVDAMEDTPSESEQDNTDAESTDDAGSTQPEETAETVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PVQRLTQLTAELDTLHNDRLLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPKW
HHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
LGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGG
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
RQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPD
HHHEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHCHH
VLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAGDPETMQEALYPVLAD
HHHHHHHHHCCCCCCCCCCCEEECCCEEEEHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FFKPALLARMEVVPYLPLSKETLATIIAGKLTRLDNVLRSRFGAEVIIEPEVTDEIMSRV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
TRAENGARMLESVIDGDMLPPLSLLLLQKMAANTAIARIRLSAADGAFTADVEDAQNDES
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCCCCC
VTEDEAVL
CCCCCCCC
>Mature Secondary Structure
MIQIDLAALVKRLNPFTKQALEMAASECMSQQSAEITVSHVLIQMLAIPRSDLRVITEQV
CEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHH
DITVDTLRQSLTEERYATVRMADGYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLA
HHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
LLHSPLRYVPPAVARLLTGINRDRLQQDFAQWTRESAETAMRNADGQTMNTMVDTGDSLL
HHHCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHH
ARYAKNMTADARNGRLDPVLCRDHEIDLMLDILCRRRKNNPVVVGEAGVGKSALIEGLAL
HHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
RIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAH
HHHHCCCCHHHCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
TLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEP
HHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCC
NAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARV
CCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHE
AINLSSPPKQISVLTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLAALDEL
EEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
EAAWHQQQTLVREIIALRQQLLGVDAMEDTPSESEQDNTDAESTDDAGSTQPEETAETVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PVQRLTQLTAELDTLHNDRLLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPKW
HHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
LGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGG
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
RQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPD
HHHEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHCHH
VLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAGDPETMQEALYPVLAD
HHHHHHHHHCCCCCCCCCCCEEECCCEEEEHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FFKPALLARMEVVPYLPLSKETLATIIAGKLTRLDNVLRSRFGAEVIIEPEVTDEIMSRV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
TRAENGARMLESVIDGDMLPPLSLLLLQKMAANTAIARIRLSAADGAFTADVEDAQNDES
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCCCCC
VTEDEAVL
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]