Click here to switch to the map view.

The map label for this gene is yedQ [H]

Identifier: 218549280

GI number: 218549280

Start: 1988764

End: 1990476

Strand: Reverse

Name: yedQ [H]

Synonym: EFER_1940

Alternate gene names: 218549280

Gene position: 1990476-1988764 (Counterclockwise)

Preceding gene: 218549281

Following gene: 218549277

Centisome position: 43.38

GC content: 48.86

Gene sequence:

>1713_bases
GTGGTTCACCAGACATCAGTGGAAAACAGAAGCTGGCATAAAAAGCTGGCGCGCCGTCTTGGGCCAGGCAATATCGTTAA
TATTTGCTTTGTGGTTGTTTTGCTTTGCTCCACATTGCTGACCTGGCGAGAAGTGGTGGTACTGGAAGATGCTTATATCT
CCAGTCAGCGAAATCATCTGGAAAATGTTGCCAACGCATTAGATAAACAACTGCAATATAACGTCGATAAACTTCTGTTT
TTGCGTAATGGTATGCACGAAGCACTGATGACGCCGCTGAACTTCTCGGCACTACAAAATGCCATTACCCAATTCCAACA
AAATCGAAATAAGCGTTACTGGCAAATTGGTCTCGATCGTCGCCGTACACTGATGATCAATGGTGTGTCTGATGATTTTG
TCAGCCAGAGCAATCTTCTCTCACGAGCGGATGATGATTTACATAATGAACTGACGGCGGCGCTGGAAGTGGGGTATCTG
CTGCGTTTGTCGCACGCTCCGGGGGCGGCAGCACAACAGGCCATATATGTTTCACGTGCCGGTTTTTTCCTCTCCACTCA
ACCCACGTCAAACAGCAAAGATATTTTAACCCGCTACTTCGACTTCGTTACTCAGCCCTGGTTTAACGAACAGTCTGAGC
GCATGAACAAATCGCGCGGAGTGCGCTGGTTTAGTACCCCCGGTGATCACACTAACGAGACTAAACCACAAATTACCGCC
AGCATTCCCCTGGATAACCAGGGATACTGGCATGGTGTCCTGGCAATGAGCATTCCACTGGCGGCAATGCGATCTCTGCT
GGTAAATGCTACCCATAATGACACCGACGGCGAATACCAGCTCTACGACAGCAAACTTAATTTGCTGACCACCTCTACGC
CAGAACAACGGAAAATAAACACCTTTGACGATCGGGAACGGGCATTACTGGCACAGGATATCGAACACGATACGCAGGGT
GGCATCAGAATGAACAGTCGATTTATCAGCTGGGAACGGTTGGATCATTTCGACGGCGTATTAGTGCGTGTGCATACGTT
ACAAGAAGGTGTTCATGGCGATTTTGGTAGTATCAGTATTGCACTAACCCTGCTTTGGGCACTGTTTACCACCATGTTGA
TTATCTCCTGGATAGTGATTCGCAAGATGGTCAGCAATATGTTTGTGCTACAAAGTTCGCTGCAATGGCAAGCCTGGCAT
GACACCTTAACCCGTCTCTATAACCGTGGTGCCCTGTTTGAAAAAGCGCGTTTTCTTGCTCAGGAGTGCCGGGAAAATCA
ACGACCCTTCTCGGTTATTCAGGTGGATCTCGATCATTTCAAAAGCATAAATGACCGATTTGGTCATCAGGCAGGTGATC
GGGTACTTTCTCATGCCGCAGGACTTATCAGCCGCTCTCTGCGTGCACAAGACGTTGCCGGGCGAGTAGGAGGGGAAGAG
TTCTGTATCGTGCTGCCTTGCGCTAATCTGGCGCAGGCACAAGAAATTGCCGAGCGTATTCGTCTGCGTCTGAATGAAAA
AGAGATATTGATCGCCAGGAGCACTACGCTGCGGATTAGCGCCTCGCTGGGGGTGAGCAGTACCGAAGAAACGGGAGATT
ACGATTTTGAACAGTTGCAGTCACTGGCAGATGGTCGCCTCTATCTGGCAAAACAGGCCGGACGAAATCGCGTGTGTGCC
AGTGATCAACCTTTGTCAGAGGATAAAAAATAA

Upstream 100 bases:

>100_bases
TGCCAGGCGTTTTGCTTTACAGAGATAAAAGAGTGGCTCGTGGCCTCACGACATTGTTTGCTTATGCCAGAATTATAAAA
AAGAAGTTGGGAGTGCTCCG

Downstream 100 bases:

>100_bases
TCCAGGCCTTCGCGCCAGCCTTCCGGCCCTTCATGTTGTGTGCGATACACACGTGAAGGTTCGATGTGTTGTAAATGCAC
TCCTTCTCGATTCAGCCCCT

Product: diguanylate cyclase; GGDEF domain; PLP-dependent transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MVHQTSVENRSWHKKLARRLGPGNIVNICFVVVLLCSTLLTWREVVVLEDAYISSQRNHLENVANALDKQLQYNVDKLLF
LRNGMHEALMTPLNFSALQNAITQFQQNRNKRYWQIGLDRRRTLMINGVSDDFVSQSNLLSRADDDLHNELTAALEVGYL
LRLSHAPGAAAQQAIYVSRAGFFLSTQPTSNSKDILTRYFDFVTQPWFNEQSERMNKSRGVRWFSTPGDHTNETKPQITA
SIPLDNQGYWHGVLAMSIPLAAMRSLLVNATHNDTDGEYQLYDSKLNLLTTSTPEQRKINTFDDRERALLAQDIEHDTQG
GIRMNSRFISWERLDHFDGVLVRVHTLQEGVHGDFGSISIALTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWH
DTLTRLYNRGALFEKARFLAQECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEE
FCIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQSLADGRLYLAKQAGRNRVCA
SDQPLSEDKK

Sequences:

>Translated_570_residues
MVHQTSVENRSWHKKLARRLGPGNIVNICFVVVLLCSTLLTWREVVVLEDAYISSQRNHLENVANALDKQLQYNVDKLLF
LRNGMHEALMTPLNFSALQNAITQFQQNRNKRYWQIGLDRRRTLMINGVSDDFVSQSNLLSRADDDLHNELTAALEVGYL
LRLSHAPGAAAQQAIYVSRAGFFLSTQPTSNSKDILTRYFDFVTQPWFNEQSERMNKSRGVRWFSTPGDHTNETKPQITA
SIPLDNQGYWHGVLAMSIPLAAMRSLLVNATHNDTDGEYQLYDSKLNLLTTSTPEQRKINTFDDRERALLAQDIEHDTQG
GIRMNSRFISWERLDHFDGVLVRVHTLQEGVHGDFGSISIALTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWH
DTLTRLYNRGALFEKARFLAQECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEE
FCIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQSLADGRLYLAKQAGRNRVCA
SDQPLSEDKK
>Mature_570_residues
MVHQTSVENRSWHKKLARRLGPGNIVNICFVVVLLCSTLLTWREVVVLEDAYISSQRNHLENVANALDKQLQYNVDKLLF
LRNGMHEALMTPLNFSALQNAITQFQQNRNKRYWQIGLDRRRTLMINGVSDDFVSQSNLLSRADDDLHNELTAALEVGYL
LRLSHAPGAAAQQAIYVSRAGFFLSTQPTSNSKDILTRYFDFVTQPWFNEQSERMNKSRGVRWFSTPGDHTNETKPQITA
SIPLDNQGYWHGVLAMSIPLAAMRSLLVNATHNDTDGEYQLYDSKLNLLTTSTPEQRKINTFDDRERALLAQDIEHDTQG
GIRMNSRFISWERLDHFDGVLVRVHTLQEGVHGDFGSISIALTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWH
DTLTRLYNRGALFEKARFLAQECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEE
FCIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQSLADGRLYLAKQAGRNRVCA
SDQPLSEDKK

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=562, Percent_Identity=73.1316725978648, Blast_Score=871, Evalue=0.0,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=35.2941176470588, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=34.9112426035503, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=34.7826086956522, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=34.8837209302326, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=157, Percent_Identity=36.3057324840764, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=34.7560975609756, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081974, Length=214, Percent_Identity=29.4392523364486, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=32.3170731707317, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.1637426900585, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64821; Mature: 64821

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHQTSVENRSWHKKLARRLGPGNIVNICFVVVLLCSTLLTWREVVVLEDAYISSQRNHL
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH
ENVANALDKQLQYNVDKLLFLRNGMHEALMTPLNFSALQNAITQFQQNRNKRYWQIGLDR
HHHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
RRTLMINGVSDDFVSQSNLLSRADDDLHNELTAALEVGYLLRLSHAPGAAAQQAIYVSRA
CEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHEEEEC
GFFLSTQPTSNSKDILTRYFDFVTQPWFNEQSERMNKSRGVRWFSTPGDHTNETKPQITA
CEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCEEE
SIPLDNQGYWHGVLAMSIPLAAMRSLLVNATHNDTDGEYQLYDSKLNLLTTSTPEQRKIN
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCCCCCC
TFDDRERALLAQDIEHDTQGGIRMNSRFISWERLDHFDGVLVRVHTLQEGVHGDFGSISI
CCCHHHHHHHHHHHCCCCCCCEEECCEEECHHHHHCCCCCEEEHHHHHHCCCCCCHHHHH
ALTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH
QECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEE
HHHHCCCCCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FCIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQ
EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHH
SLADGRLYLAKQAGRNRVCASDQPLSEDKK
HHHCCCEEEEHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVHQTSVENRSWHKKLARRLGPGNIVNICFVVVLLCSTLLTWREVVVLEDAYISSQRNHL
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH
ENVANALDKQLQYNVDKLLFLRNGMHEALMTPLNFSALQNAITQFQQNRNKRYWQIGLDR
HHHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
RRTLMINGVSDDFVSQSNLLSRADDDLHNELTAALEVGYLLRLSHAPGAAAQQAIYVSRA
CEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHEEEEC
GFFLSTQPTSNSKDILTRYFDFVTQPWFNEQSERMNKSRGVRWFSTPGDHTNETKPQITA
CEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCEEE
SIPLDNQGYWHGVLAMSIPLAAMRSLLVNATHNDTDGEYQLYDSKLNLLTTSTPEQRKIN
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCCCCCC
TFDDRERALLAQDIEHDTQGGIRMNSRFISWERLDHFDGVLVRVHTLQEGVHGDFGSISI
CCCHHHHHHHHHHHCCCCCCCEEECCEEECHHHHHCCCCCEEEHHHHHHCCCCCCHHHHH
ALTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH
QECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEE
HHHHCCCCCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FCIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQ
EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHH
SLADGRLYLAKQAGRNRVCASDQPLSEDKK
HHHCCCEEEEHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]