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The map label for this gene is csgC [C]

Identifier: 218549227

GI number: 218549227

Start: 1932623

End: 1932955

Strand: Reverse

Name: csgC [C]

Synonym: EFER_1886

Alternate gene names: 218549227

Gene position: 1932955-1932623 (Counterclockwise)

Preceding gene: 218549228

Following gene: 218549226

Centisome position: 42.12

GC content: 40.84

Gene sequence:

>333_bases
ATGAACACACTCTTATTACTGGCGGCACTTTCCAGTCAAATTACGTTTAATGCCCAGCAACAGGGGGATATTTACACTAT
TATTCCTCAGGTCACACTCACAGAGTCTTGTGTATGCCAGATAAAAATAATGTCATTACGCCAGGGAAGTGGTGGGCAAA
GTCAAACTCAGCAACAACAAACACGCTCAATACCGGCCAATCAGCCAATTGATTTAACGACGCTTAAGCTAAATATTTCA
CCTGAAGACACAGTTAAAATAGTTGTTACTGTTTCTGACGGAAAATCACTGCATTTATCACAACAATGGCCGTCCTCTGC
AAGTTCTTCATAA

Upstream 100 bases:

>100_bases
AGGTTGGCTTTGGCAACAACGCTACTGCCCATCAGTACTAATACATAATCTGTATTACAGAAAACAGGGCGGAAGCCCTG
TTTTTTTTCGGGGGTATACA

Downstream 100 bases:

>100_bases
CCGGAGAATTTATTCTTTGCTGACTGGCAGGAAATGCAGACCGCTGTCATAACTATTGTGACCCTTTTCACGCAAAACTC
GCACTTAAGGATGAGTCCTT

Product: autoagglutination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MNTLLLLAALSSQITFNAQQQGDIYTIIPQVTLTESCVCQIKIMSLRQGSGGQSQTQQQQTRSIPANQPIDLTTLKLNIS
PEDTVKIVVTVSDGKSLHLSQQWPSSASSS

Sequences:

>Translated_110_residues
MNTLLLLAALSSQITFNAQQQGDIYTIIPQVTLTESCVCQIKIMSLRQGSGGQSQTQQQQTRSIPANQPIDLTTLKLNIS
PEDTVKIVVTVSDGKSLHLSQQWPSSASSS
>Mature_110_residues
MNTLLLLAALSSQITFNAQQQGDIYTIIPQVTLTESCVCQIKIMSLRQGSGGQSQTQQQQTRSIPANQPIDLTTLKLNIS
PEDTVKIVVTVSDGKSLHLSQQWPSSASSS

Specific function: Plays a role in the extracellular assembly of CsgA into thin aggregative fimbriae (Tafi) fibers. Assembly may also require CsgE. Tafi are thought to be assembled via an extracellular nucleation-precipitation (ENP) pathway, and possibly also via an intrace

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsgC/AgfC family [H]

Homologues:

Organism=Escherichia coli, GI1787280, Length=110, Percent_Identity=75.4545454545455, Blast_Score=154, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014491 [H]

Pfam domain/function: PF10610 Tafi-CsgC [H]

EC number: NA

Molecular weight: Translated: 11887; Mature: 11887

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLLLLAALSSQITFNAQQQGDIYTIIPQVTLTESCVCQIKIMSLRQGSGGQSQTQQQQ
CCCEEEEEECCCCEEECCCCCCCEEEEECCEEECCCEEEEEEEEEEECCCCCCCHHHHHH
TRSIPANQPIDLTTLKLNISPEDTVKIVVTVSDGKSLHLSQQWPSSASSS
HHCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MNTLLLLAALSSQITFNAQQQGDIYTIIPQVTLTESCVCQIKIMSLRQGSGGQSQTQQQQ
CCCEEEEEECCCCEEECCCCCCCEEEEECCEEECCCEEEEEEEEEEECCCCCCCHHHHHH
TRSIPANQPIDLTTLKLNISPEDTVKIVVTVSDGKSLHLSQQWPSSASSS
HHCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA