Click here to switch to the map view.

The map label for this gene is ymdA [H]

Identifier: 218549226

GI number: 218549226

Start: 1932193

End: 1932507

Strand: Reverse

Name: ymdA [H]

Synonym: EFER_1885

Alternate gene names: 218549226

Gene position: 1932507-1932193 (Counterclockwise)

Preceding gene: 218549227

Following gene: 218549225

Centisome position: 42.11

GC content: 40.63

Gene sequence:

>315_bases
ATGTTGGCAAAACATCATTTGAGAATCTGTCTGGCTACCATAGCTATTATCTCTTACCCGGTACTGGCAGGCAGTAATGT
TACTGGTGGTGTGATCCAGTTTCGTGGACAAGTCGTCGAACCACCCTGTGATTCATCTGTTGATAATCAGCATGTGGTTA
TGAGTTGTCTACAAAACGGTCAGATCAAAACATCACGTTTTACTCTCCAGCAACTCACTAAAACATCACCGCAACTGGCA
GCGACAGCAAATGTAAATATGCATTATCTTGATAAAGACAAAAAATTGGCAATTATGACTATCGAATATCGTTAG

Upstream 100 bases:

>100_bases
TTTGCTGACTGGCAGGAAATGCAGACCGCTGTCATAACTATTGTGACCCTTTTCACGCAAAACTCGCACTTAAGGATGAG
TCCTTATTAAGGATGCATTT

Downstream 100 bases:

>100_bases
CACTGGCGTGAGGATTATCTTAACAGCGAATAAAAACTGCGATTTTAGCTAAAACCCTGCTGTACACTTACAAGACAAGT
TGCAAGGAGGAGTTATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MLAKHHLRICLATIAIISYPVLAGSNVTGGVIQFRGQVVEPPCDSSVDNQHVVMSCLQNGQIKTSRFTLQQLTKTSPQLA
ATANVNMHYLDKDKKLAIMTIEYR

Sequences:

>Translated_104_residues
MLAKHHLRICLATIAIISYPVLAGSNVTGGVIQFRGQVVEPPCDSSVDNQHVVMSCLQNGQIKTSRFTLQQLTKTSPQLA
ATANVNMHYLDKDKKLAIMTIEYR
>Mature_104_residues
MLAKHHLRICLATIAIISYPVLAGSNVTGGVIQFRGQVVEPPCDSSVDNQHVVMSCLQNGQIKTSRFTLQQLTKTSPQLA
ATANVNMHYLDKDKKLAIMTIEYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of the fimA/papA family of fimbria proteins [H]

Homologues:

Organism=Escherichia coli, GI1787281, Length=83, Percent_Identity=48.1927710843374, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11483; Mature: 11483

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKHHLRICLATIAIISYPVLAGSNVTGGVIQFRGQVVEPPCDSSVDNQHVVMSCLQNG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHCC
QIKTSRFTLQQLTKTSPQLAATANVNMHYLDKDKKLAIMTIEYR
CEEHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MLAKHHLRICLATIAIISYPVLAGSNVTGGVIQFRGQVVEPPCDSSVDNQHVVMSCLQNG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHCC
QIKTSRFTLQQLTKTSPQLAATANVNMHYLDKDKKLAIMTIEYR
CEEHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]