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The map label for this gene is ymdB [H]

Identifier: 218549225

GI number: 218549225

Start: 1931565

End: 1932113

Strand: Reverse

Name: ymdB [H]

Synonym: EFER_1884

Alternate gene names: 218549225

Gene position: 1932113-1931565 (Counterclockwise)

Preceding gene: 218549226

Following gene: 218549224

Centisome position: 42.11

GC content: 49.73

Gene sequence:

>549_bases
TTGCAAGGAGGAGTTATGAAATCGCGAATTCATGTATTGCAGGGCGACATTACCCAGCTCGCAGTTGATGTGATAGTTAA
TGCTGCGAACTCATCATTAATGGGCGGCGGTGGGGTCGATGGTGCGATTCATCGTGCTGCGGGGCCGGAACTCCTCGAAG
CCTGCCAGAAAGTTCGCCGCCAACAAGGGGAATGTCCCACGGGTCATGCGGTGATTACTATTGCCGGAAATCTTCCTGCC
AGGGCGGTGATTCATACTGTAGGCCCTGTGTGGCGTGATGGTGAGCACAACGAGGATCAATTATTACATGATGCCTATCT
CAACAGCCTGAAGCTGGCGCAAGCCAATGGCTATAAGTCAATCGCCTTTCCTGCCATTAGTACCGGGGTATATGGATTTC
CACGAGCAGCTGCGGCAGAAATTGCTGTAAAAACAGTTTCAGATTTTATAACCCGTCACGCCTTACCGGAGCAGATATAC
TTTGTCTGTTATGATGAAGAAAACTCCCGCCTTTATAACAGACTCCTTACCCAACAAGGAGATGAGTGA

Upstream 100 bases:

>100_bases
ATGACTATCGAATATCGTTAGCACTGGCGTGAGGATTATCTTAACAGCGAATAAAAACTGCGATTTTAGCTAAAACCCTG
CTGTACACTTACAAGACAAG

Downstream 100 bases:

>100_bases
TTTGCCCCGTCTGGCACTAGCGGTAGAACCGTTGTGCGCACAACATCCGGGGCAGTGTGGATTGCTGCCCCTTGATGATA
GCCTGGATGCTTTTGCTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MQGGVMKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNLPA
RAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIY
FVCYDEENSRLYNRLLTQQGDE

Sequences:

>Translated_182_residues
MQGGVMKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNLPA
RAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIY
FVCYDEENSRLYNRLLTQQGDE
>Mature_182_residues
MQGGVMKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNLPA
RAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIY
FVCYDEENSRLYNRLLTQQGDE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=177, Percent_Identity=47.4576271186441, Blast_Score=159, Evalue=1e-39,
Organism=Homo sapiens, GI13569840, Length=174, Percent_Identity=45.9770114942529, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI154813199, Length=138, Percent_Identity=44.2028985507246, Blast_Score=111, Evalue=3e-25,
Organism=Homo sapiens, GI20336746, Length=166, Percent_Identity=33.1325301204819, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI93141018, Length=169, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI93141020, Length=169, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI4758496, Length=169, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI207450721, Length=170, Percent_Identity=34.1176470588235, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923143, Length=170, Percent_Identity=34.1176470588235, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI226371716, Length=142, Percent_Identity=33.0985915492958, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371714, Length=142, Percent_Identity=33.0985915492958, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371712, Length=142, Percent_Identity=33.0985915492958, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI165377137, Length=165, Percent_Identity=28.4848484848485, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI8923920, Length=174, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=7e-15,
Organism=Escherichia coli, GI1787283, Length=177, Percent_Identity=84.180790960452, Blast_Score=318, Evalue=1e-88,
Organism=Caenorhabditis elegans, GI17538214, Length=171, Percent_Identity=45.6140350877193, Blast_Score=130, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24586353, Length=159, Percent_Identity=32.0754716981132, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19605; Mature: 19605

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGGVMKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRR
CCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
QQGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKS
HCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
IAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLTQQG
EECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCC
DE
CC
>Mature Secondary Structure
MQGGVMKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRR
CCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
QQGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKS
HCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
IAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLTQQG
EECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCC
DE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]