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The map label for this gene is ymdC [H]

Identifier: 218549224

GI number: 218549224

Start: 1930142

End: 1931632

Strand: Reverse

Name: ymdC [H]

Synonym: EFER_1883

Alternate gene names: 218549224

Gene position: 1931632-1930142 (Counterclockwise)

Preceding gene: 218549225

Following gene: 218549221

Centisome position: 42.1

GC content: 48.29

Gene sequence:

>1491_bases
TTGTCTGTTATGATGAAGAAAACTCCCGCCTTTATAACAGACTCCTTACCCAACAAGGAGATGAGTGATTTGCCCCGTCT
GGCACTAGCGGTAGAACCGTTGTGCGCACAACATCCGGGGCAGTGTGGATTGCTGCCCCTTGATGATAGCCTGGATGCTT
TTGCTGCCCGTTATCGATTGACCGAAATGGCAGAGCGTACCCTGGATGTGCAGTATTACATCTGGCAGGACGATATGTCT
GGTCGTTTGCTATTTGCAGCGCTCCTTGCTGCGGCGAAACGTGGCGTGCATGTGCGCTTGCTGCTGGATGATAATAATAC
ACCTGGTCTTGATGACACCTTGCGGCTGTTGGATAGCCATCCGAATATTGAGATTCGGTTGTTCAATCCTTTTTCTTTTC
GCCTCTTGCGCCCATTGGGCTATTTGACGGATTTCGCCCGTCTTAATCGCCGGATGCACAATAAAAGTTTTACTGTTGAT
GGTGTTGTCACGTTGGTGGGTGGGCGCAATATTGGCGATGCGTATTTCGGTGCAGGGGAAGAACCTCTGTTTTCGGATCT
TGATGTGCTGGCTGTTGGCCCAGTAGTCAGCGATGTGGCAGATGATTTTGAACGTTACTGGCATTGTGGATCTGTCGCTT
CGTTGCAACAGGTGCTCTCGCTTTCTGAGCAAGAGATCTCAGAACGGATTGTTGTACCAGACTCCTGGCAAAACGATCCG
ATGGCTCAGCGCTATATGCATATACTGGAAACCAGTCAGTTTATGACTCATCTTTATAATCGCTCATTGCCACTGATTTG
GGCAAAAACACGTTTGTTAAGTGATGATCCGGCAAAAGGTGAGGGCAAAGCGCAACGACATTCTCTGTTGCCGCAACGTT
TGTTTGATGTAATGGGCTCGCCCGCCGAGCGCGTGGATATCATATCCTCCTATTTTGTCCCTACTCGTGCTGGTGTTGCG
CAGTTACTCAGGCTGGTGCGAAAAGGGGTGAAAATCGCCATCCTGACTAATTCACTTGCCGCCAATGATGTGGCAGTGGT
GCACTCAGGTTATGCCCGCTGGCGTAAGAAACTGTTGCGTTATGGAGTGGAGTTATATGAGCTAAAACCAACTCGTGAGC
AACCGAGCGTTATTCATGATCGCGGAATTACCGGTAACTCTGGTGCCAGTTTGCATGCCAAAACTTTCAGTATAGATAGT
AAAACAGTATTTATCGGTTCGTTTAATTTTGATCCTCGCTCAATACAACTTAATACGGAAATGGGATTTGTCATTGAAAG
CGAAGCTTTGGCTTCGCTGATTCACAAGCGCTTTTTACAAAGTTTGCATGATGCTGCCTGGCAGTTGCGCCTGGATAAAT
GGGGGCGAATTAACTGGATCGAGCACCAACAAGACAGGGATGTTGTGCTAAAAAAAGAACCCGCGACCACATTGTGGAAA
CGGGCTCTGGTGAAACTGGCGAGGCTTTTGCCGGTTGAATGGTTATTGTGA

Upstream 100 bases:

>100_bases
ACCGGGGTATATGGATTTCCACGAGCAGCTGCGGCAGAAATTGCTGTAAAAACAGTTTCAGATTTTATAACCCGTCACGC
CTTACCGGAGCAGATATACT

Downstream 100 bases:

>100_bases
CCTGTACTTAGCGTGCCACCGCATTATTATTGTCACGCTTCATTGCTGGTTTGCCGGAGAATAAAAACTTCAACAGTGGG
ATGCGCAAATGAATTTCGTA

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MSVMMKKTPAFITDSLPNKEMSDLPRLALAVEPLCAQHPGQCGLLPLDDSLDAFAARYRLTEMAERTLDVQYYIWQDDMS
GRLLFAALLAAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEIRLFNPFSFRLLRPLGYLTDFARLNRRMHNKSFTVD
GVVTLVGGRNIGDAYFGAGEEPLFSDLDVLAVGPVVSDVADDFERYWHCGSVASLQQVLSLSEQEISERIVVPDSWQNDP
MAQRYMHILETSQFMTHLYNRSLPLIWAKTRLLSDDPAKGEGKAQRHSLLPQRLFDVMGSPAERVDIISSYFVPTRAGVA
QLLRLVRKGVKIAILTNSLAANDVAVVHSGYARWRKKLLRYGVELYELKPTREQPSVIHDRGITGNSGASLHAKTFSIDS
KTVFIGSFNFDPRSIQLNTEMGFVIESEALASLIHKRFLQSLHDAAWQLRLDKWGRINWIEHQQDRDVVLKKEPATTLWK
RALVKLARLLPVEWLL

Sequences:

>Translated_496_residues
MSVMMKKTPAFITDSLPNKEMSDLPRLALAVEPLCAQHPGQCGLLPLDDSLDAFAARYRLTEMAERTLDVQYYIWQDDMS
GRLLFAALLAAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEIRLFNPFSFRLLRPLGYLTDFARLNRRMHNKSFTVD
GVVTLVGGRNIGDAYFGAGEEPLFSDLDVLAVGPVVSDVADDFERYWHCGSVASLQQVLSLSEQEISERIVVPDSWQNDP
MAQRYMHILETSQFMTHLYNRSLPLIWAKTRLLSDDPAKGEGKAQRHSLLPQRLFDVMGSPAERVDIISSYFVPTRAGVA
QLLRLVRKGVKIAILTNSLAANDVAVVHSGYARWRKKLLRYGVELYELKPTREQPSVIHDRGITGNSGASLHAKTFSIDS
KTVFIGSFNFDPRSIQLNTEMGFVIESEALASLIHKRFLQSLHDAAWQLRLDKWGRINWIEHQQDRDVVLKKEPATTLWK
RALVKLARLLPVEWLL
>Mature_495_residues
SVMMKKTPAFITDSLPNKEMSDLPRLALAVEPLCAQHPGQCGLLPLDDSLDAFAARYRLTEMAERTLDVQYYIWQDDMSG
RLLFAALLAAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEIRLFNPFSFRLLRPLGYLTDFARLNRRMHNKSFTVDG
VVTLVGGRNIGDAYFGAGEEPLFSDLDVLAVGPVVSDVADDFERYWHCGSVASLQQVLSLSEQEISERIVVPDSWQNDPM
AQRYMHILETSQFMTHLYNRSLPLIWAKTRLLSDDPAKGEGKAQRHSLLPQRLFDVMGSPAERVDIISSYFVPTRAGVAQ
LLRLVRKGVKIAILTNSLAANDVAVVHSGYARWRKKLLRYGVELYELKPTREQPSVIHDRGITGNSGASLHAKTFSIDSK
TVFIGSFNFDPRSIQLNTEMGFVIESEALASLIHKRFLQSLHDAAWQLRLDKWGRINWIEHQQDRDVVLKKEPATTLWKR
ALVKLARLLPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=81.8181818181818, Blast_Score=800, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=398, Percent_Identity=24.1206030150754, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56123; Mature: 55992

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVMMKKTPAFITDSLPNKEMSDLPRLALAVEPLCAQHPGQCGLLPLDDSLDAFAARYRL
CCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCHHHHHHHHHH
TEMAERTLDVQYYIWQDDMSGRLLFAALLAAAKRGVHVRLLLDDNNTPGLDDTLRLLDSH
HHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCC
PNIEIRLFNPFSFRLLRPLGYLTDFARLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGE
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCC
EPLFSDLDVLAVGPVVSDVADDFERYWHCGSVASLQQVLSLSEQEISERIVVPDSWQNDP
CCCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCH
MAQRYMHILETSQFMTHLYNRSLPLIWAKTRLLSDDPAKGEGKAQRHSLLPQRLFDVMGS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PAERVDIISSYFVPTRAGVAQLLRLVRKGVKIAILTNSLAANDVAVVHSGYARWRKKLLR
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHH
YGVELYELKPTREQPSVIHDRGITGNSGASLHAKTFSIDSKTVFIGSFNFDPRSIQLNTE
CCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEEECC
MGFVIESEALASLIHKRFLQSLHDAAWQLRLDKWGRINWIEHQQDRDVVLKKEPATTLWK
CCEEECHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHH
RALVKLARLLPVEWLL
HHHHHHHHHCCHHHCC
>Mature Secondary Structure 
SVMMKKTPAFITDSLPNKEMSDLPRLALAVEPLCAQHPGQCGLLPLDDSLDAFAARYRL
CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCHHHHHHHHHH
TEMAERTLDVQYYIWQDDMSGRLLFAALLAAAKRGVHVRLLLDDNNTPGLDDTLRLLDSH
HHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCC
PNIEIRLFNPFSFRLLRPLGYLTDFARLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGE
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCC
EPLFSDLDVLAVGPVVSDVADDFERYWHCGSVASLQQVLSLSEQEISERIVVPDSWQNDP
CCCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCH
MAQRYMHILETSQFMTHLYNRSLPLIWAKTRLLSDDPAKGEGKAQRHSLLPQRLFDVMGS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PAERVDIISSYFVPTRAGVAQLLRLVRKGVKIAILTNSLAANDVAVVHSGYARWRKKLLR
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHH
YGVELYELKPTREQPSVIHDRGITGNSGASLHAKTFSIDSKTVFIGSFNFDPRSIQLNTE
CCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEEECC
MGFVIESEALASLIHKRFLQSLHDAAWQLRLDKWGRINWIEHQQDRDVVLKKEPATTLWK
CCEEECHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHH
RALVKLARLLPVEWLL
HHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]