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The map label for this gene is yddE [C]

Identifier: 218549140

GI number: 218549140

Start: 1847374

End: 1848201

Strand: Reverse

Name: yddE [C]

Synonym: EFER_1792

Alternate gene names: 218549140

Gene position: 1848201-1847374 (Counterclockwise)

Preceding gene: 218549141

Following gene: 218549136

Centisome position: 40.28

GC content: 50.36

Gene sequence:

>828_bases
ATGGGCTATTCCGGTGGCGATCCAGAGGTTTTTGTAATGCGACAAATCGATTTTTACATGGTAGATGCTTTTGCTACTTC
CACATTTGAAGGTAATGCCGCAGCTGTTTGTCCTCTCACAGAATGGTTGCCCGATGAGACATTACTGAAAATGTCTAAAC
AGCATAACCAATCAGAAACCGCTTATTTTGTCCCGACTGAAAAAGGTTTTGAGCTGCGCTGGTTCACCACTCAGGCGGAA
ATCAATCTGTGCGGACATGCAACATTGGCCGCTGCTCACGTCATCTTTGAACATCTGAACCATCCGGGCGAGACTATCCA
GTTTGATACCCGGTTTGTTGGTCCATTGACGGTGACACGCAACGGTGAATGGCTGACGCTTGATTTTCCTGCCTGGAAAA
CTGAACCCGTCACACCACCGTCATTACTGCTGGAAGCGTTAGGTATTACAGAATACATAGAAGTGCGCGTGGCGCGTGAT
TACATGGTGGTGCTGGAGAATCAACAGCAGGTTGAAGCAGTACGACCGAATATTAATGCCATGCTGCCTCTGGGAAAAAT
GGTTTGTATCACCGCTCCGGGGGAAGGGGAATACGATTTTGTCAGCCGTTTCTTCTGTCCGGGTGAAGCCGTAGTGGAAG
ACCCCGTCACAGGTTCAGCGCACAGTATGCTCATTCCGTACTGGGCGGAAAAACTTAATAAGACACAAATGATGGCGTAT
CAGGGCGCCGAGCGCGGCGGGGATTTACGCTGCCAGCAAGTCGGGGAACGTGTCCACATCGGCGGGCAGGCAACAACGTA
CCTGGCGGGTAAAATACTGTTGCGCTAG

Upstream 100 bases:

>100_bases
GATAATCTTTGGCGGTTTACTCGATTTCGCGGTTGTTTTGTCGCGTTCTCTGCGGACGTTGAAAGAATTCAAAAAATACG
TTGTTAACACATGGTAAGGT

Downstream 100 bases:

>100_bases
AACATACGGGATGTTGTTCGAAAGTCAGGTCTGCTGTTTGATCATGGCAGACCTGATGGTGGGGCTGGCAGTTCGCTCCG
TGTCAGGAGCGGATGTTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MGYSGGDPEVFVMRQIDFYMVDAFATSTFEGNAAAVCPLTEWLPDETLLKMSKQHNQSETAYFVPTEKGFELRWFTTQAE
INLCGHATLAAAHVIFEHLNHPGETIQFDTRFVGPLTVTRNGEWLTLDFPAWKTEPVTPPSLLLEALGITEYIEVRVARD
YMVVLENQQQVEAVRPNINAMLPLGKMVCITAPGEGEYDFVSRFFCPGEAVVEDPVTGSAHSMLIPYWAEKLNKTQMMAY
QGAERGGDLRCQQVGERVHIGGQATTYLAGKILLR

Sequences:

>Translated_275_residues
MGYSGGDPEVFVMRQIDFYMVDAFATSTFEGNAAAVCPLTEWLPDETLLKMSKQHNQSETAYFVPTEKGFELRWFTTQAE
INLCGHATLAAAHVIFEHLNHPGETIQFDTRFVGPLTVTRNGEWLTLDFPAWKTEPVTPPSLLLEALGITEYIEVRVARD
YMVVLENQQQVEAVRPNINAMLPLGKMVCITAPGEGEYDFVSRFFCPGEAVVEDPVTGSAHSMLIPYWAEKLNKTQMMAY
QGAERGGDLRCQQVGERVHIGGQATTYLAGKILLR
>Mature_274_residues
GYSGGDPEVFVMRQIDFYMVDAFATSTFEGNAAAVCPLTEWLPDETLLKMSKQHNQSETAYFVPTEKGFELRWFTTQAEI
NLCGHATLAAAHVIFEHLNHPGETIQFDTRFVGPLTVTRNGEWLTLDFPAWKTEPVTPPSLLLEALGITEYIEVRVARDY
MVVLENQQQVEAVRPNINAMLPLGKMVCITAPGEGEYDFVSRFFCPGEAVVEDPVTGSAHSMLIPYWAEKLNKTQMMAYQ
GAERGGDLRCQQVGERVHIGGQATTYLAGKILLR

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=33.9160839160839, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI74316009, Length=250, Percent_Identity=33.6, Blast_Score=122, Evalue=3e-28,
Organism=Escherichia coli, GI1787737, Length=266, Percent_Identity=27.8195488721804, Blast_Score=81, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=31.2101910828025, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=31.2101910828025, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17542158, Length=309, Percent_Identity=29.7734627831715, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=309, Percent_Identity=29.7734627831715, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30685; Mature: 30554

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYSGGDPEVFVMRQIDFYMVDAFATSTFEGNAAAVCPLTEWLPDETLLKMSKQHNQSET
CCCCCCCCCEEEEEECCEEEEEEEEECCCCCCEEEECCHHHHCCCHHHHHHHHHCCCCCE
AYFVPTEKGFELRWFTTQAEINLCGHATLAAAHVIFEHLNHPGETIQFDTRFVGPLTVTR
EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCEEECEEEEEC
NGEWLTLDFPAWKTEPVTPPSLLLEALGITEYIEVRVARDYMVVLENQQQVEAVRPNINA
CCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCEEEEECCCHHHHHHCCCCCE
MLPLGKMVCITAPGEGEYDFVSRFFCPGEAVVEDPVTGSAHSMLIPYWAEKLNKTQMMAY
EECCCEEEEEECCCCCCHHHHHHHCCCCCCEECCCCCCCCCEEEEHHHHHHCCHHHEEEE
QGAERGGDLRCQQVGERVHIGGQATTYLAGKILLR
CCCCCCCCEEHHHCCCEEEECCCEEEEEEEEEECC
>Mature Secondary Structure 
GYSGGDPEVFVMRQIDFYMVDAFATSTFEGNAAAVCPLTEWLPDETLLKMSKQHNQSET
CCCCCCCCEEEEEECCEEEEEEEEECCCCCCEEEECCHHHHCCCHHHHHHHHHCCCCCE
AYFVPTEKGFELRWFTTQAEINLCGHATLAAAHVIFEHLNHPGETIQFDTRFVGPLTVTR
EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCEEECEEEEEC
NGEWLTLDFPAWKTEPVTPPSLLLEALGITEYIEVRVARDYMVVLENQQQVEAVRPNINA
CCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCEEEEECCCHHHHHHCCCCCE
MLPLGKMVCITAPGEGEYDFVSRFFCPGEAVVEDPVTGSAHSMLIPYWAEKLNKTQMMAY
EECCCEEEEEECCCCCCHHHHHHHCCCCCCEECCCCCCCCCEEEEHHHHHHCCHHHEEEE
QGAERGGDLRCQQVGERVHIGGQATTYLAGKILLR
CCCCCCCCEEHHHCCCEEEECCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]