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The map label for this gene is ycgR [H]

Identifier: 218549109

GI number: 218549109

Start: 1810819

End: 1811553

Strand: Direct

Name: ycgR [H]

Synonym: EFER_1761

Alternate gene names: 218549109

Gene position: 1810819-1811553 (Clockwise)

Preceding gene: 218549107

Following gene: 218549111

Centisome position: 39.46

GC content: 47.35

Gene sequence:

>735_bases
GTGAGTCATTACCATGAGCAGTTCCTGAAGAGTAATCCGTTAGCCGTTCTCGGTGTACTGCGTGATCTACACAAAGCCCA
GGTACCGCTGCGTATTTCGTGGAACTCCGGGCAATTCATCAGCAAAATTCTACTGGTGACGCCTGATACGTTGATTATGG
ATTTTGGTAGTCAGGTGGCAGAAAATATCGCCGTTAAAAATGCGCAAAATATAACGATCACGGCGGAAACTCAGGGCGCT
AAAGTAGAGTTTATGCTGGAAACATTACCTGACGGTGAATATCAGCAACTTCCCGCATTTATCAGTCCTTTGCCGCAATC
ATTATGGTTTGTCCAGCGAAGAAAATATTTCCGTATCTCCGCGCCTCTTCATCCTCCTTATTACTGCACAGCACAATTAC
CTGATAATTCGAAGTTACGTTGTCGACTGTACGATCTTTCGCTGGGGGGAATGGGCGTATTACTGGAGACTGCGCCACCC
GAAAACTTGCAGGAAGGAATGCAATTTTCGCATATGGAGGTCAATATGGGGCAATGGGGTATTTTCCATTTTGACGCTCA
GCTTTTGTCGATAAGTGAACGCGTTATCGTCGCCAGTAAAAATGAGACCGTCACCACTCCCCGCCTTAGCTTTCGTTTTC
TCAACGTCGGCCCGGCGATGGAGCGGGAATTACAGCGGATTATATTTTCCCTTGAACGGGAAGAGCGCGAACGCGCCAGT
AAAGTGCGTAACTAA

Upstream 100 bases:

>100_bases
TTTGGTCACCAATCTTAAATTTCATTCATTGGTATTAACTTTTTCCCGCTGCTGCCGATAACCCAAGGACAGTCTGTCAG
ACAACCAGGAGTTTTTCCGC

Downstream 100 bases:

>100_bases
GTACCAGGACGCTACATTTCATCCAGCGCGCGTTGCAGTTTCCAGATGTAACGCGGCGCCTGAGGTGCCGGATGATTTTT
TGCCACATGGTCAAAAAACT

Product: regulator

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSHYHEQFLKSNPLAVLGVLRDLHKAQVPLRISWNSGQFISKILLVTPDTLIMDFGSQVAENIAVKNAQNITITAETQGA
KVEFMLETLPDGEYQQLPAFISPLPQSLWFVQRRKYFRISAPLHPPYYCTAQLPDNSKLRCRLYDLSLGGMGVLLETAPP
ENLQEGMQFSHMEVNMGQWGIFHFDAQLLSISERVIVASKNETVTTPRLSFRFLNVGPAMERELQRIIFSLEREERERAS
KVRN

Sequences:

>Translated_244_residues
MSHYHEQFLKSNPLAVLGVLRDLHKAQVPLRISWNSGQFISKILLVTPDTLIMDFGSQVAENIAVKNAQNITITAETQGA
KVEFMLETLPDGEYQQLPAFISPLPQSLWFVQRRKYFRISAPLHPPYYCTAQLPDNSKLRCRLYDLSLGGMGVLLETAPP
ENLQEGMQFSHMEVNMGQWGIFHFDAQLLSISERVIVASKNETVTTPRLSFRFLNVGPAMERELQRIIFSLEREERERAS
KVRN
>Mature_243_residues
SHYHEQFLKSNPLAVLGVLRDLHKAQVPLRISWNSGQFISKILLVTPDTLIMDFGSQVAENIAVKNAQNITITAETQGAK
VEFMLETLPDGEYQQLPAFISPLPQSLWFVQRRKYFRISAPLHPPYYCTAQLPDNSKLRCRLYDLSLGGMGVLLETAPPE
NLQEGMQFSHMEVNMGQWGIFHFDAQLLSISERVIVASKNETVTTPRLSFRFLNVGPAMERELQRIIFSLEREERERASK
VRN

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. When bound to c-di-GMP it binds to elements of the flagellar motor (MotA (PubMed:20303158) and/or FliG and FliM (PubMed:20346

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=244, Percent_Identity=74.5901639344262, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27876; Mature: 27744

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYHEQFLKSNPLAVLGVLRDLHKAQVPLRISWNSGQFISKILLVTPDTLIMDFGSQVA
CCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHEEEEECCCHHHHHHHHHHH
ENIAVKNAQNITITAETQGAKVEFMLETLPDGEYQQLPAFISPLPQSLWFVQRRKYFRIS
HHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCHHHCCHHHCCCHHHHHHHHHCCEEEEE
APLHPPYYCTAQLPDNSKLRCRLYDLSLGGMGVLLETAPPENLQEGMQFSHMEVNMGQWG
CCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHCCCEEEEEECCCCCE
IFHFDAQLLSISERVIVASKNETVTTPRLSFRFLNVGPAMERELQRIIFSLEREERERAS
EEEEHHHHHHCCCEEEEEECCCEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
KVRN
HCCC
>Mature Secondary Structure 
SHYHEQFLKSNPLAVLGVLRDLHKAQVPLRISWNSGQFISKILLVTPDTLIMDFGSQVA
CHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHEEEEECCCHHHHHHHHHHH
ENIAVKNAQNITITAETQGAKVEFMLETLPDGEYQQLPAFISPLPQSLWFVQRRKYFRIS
HHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCHHHCCHHHCCCHHHHHHHHHCCEEEEE
APLHPPYYCTAQLPDNSKLRCRLYDLSLGGMGVLLETAPPENLQEGMQFSHMEVNMGQWG
CCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHCCCEEEEEECCCCCE
IFHFDAQLLSISERVIVASKNETVTTPRLSFRFLNVGPAMERELQRIIFSLEREERERAS
EEEEHHHHHHCCCEEEEEECCCEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
KVRN
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]