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The map label for this gene is des6 [H]

Identifier: 218549074

GI number: 218549074

Start: 1772844

End: 1773935

Strand: Reverse

Name: des6 [H]

Synonym: EFER_1726

Alternate gene names: 218549074

Gene position: 1773935-1772844 (Counterclockwise)

Preceding gene: 218549075

Following gene: 218549071

Centisome position: 38.66

GC content: 52.2

Gene sequence:

>1092_bases
ATGAACCTGTTTAATCCCGACAGGTTAATCACTTTTCCTGCTGATGATCCGCAACTGGTGAAGCAGCTGCAAAACGATAC
GAAAGTCTATCTGGCGAAATCATGCGATCATCGGTATGCCGACGGCTGGGCATTCACCAAAATGGCGGCATTGATTATTG
CCTGTTTATGCTGCTATTCACTGGCGTTATCTCAAAGTCAGTGGGGACTGTATCTGTTGTGGTATCTGGCGATGATGTTT
TGCGCCATGTTGTTAGCGGTCAATGTGGTGCATGACGCTTCGCACGATGCGTTTTTGCGCGGTAAAAAGGCCAATGCGTG
GCTAAACCGGTGGGTTGCGTTCCCGATGGGGCTTGATCCGGACTGCTGGCGGGTGCGCCATGTTCGCTTTCATCACGGCT
TTACCAATATTGAATTTTACGATCCTGACACCGCAGAAAATGGCATTCTTCGCCAGACGCCGTGGCAACGGTGGCGACCT
TTTATGCGCCAGCAGCATCGCTACTGGCCACTGGTCGCGGCGCTCACCTTTCCCTGGTACATCTGGGTAGTGGACTGGTT
CGATCGCGCCGGGTTTACTCCGGTCACACGACATCTGGCCCTGCGAGGCTTTGCTGGCTGGGGATATTTCTTAGCCGGGA
AACTGGCGCATTGTGTGTTGTGTCTGATACTCCCGTGGCTTCTGTCTGAATTTAATTTCATGACCATCCTGCTGACTTAT
CTGCTCAGCCAGCTGCTGGCGTCATTGATCTTTGTGATGTTGATTATCGGAACGCACTGGGCGAAGGGACATACGCAGTT
ACCACCAGAAGAGGGCAAAATGGCCGTGGGCCGGCTGGCGCATACCTTCGCTACTACCTTTGACTGGACGCCGCAACCTG
CATGGCTTGGTTACTGGCTGGGCGGGATTAATCTGCATCTTACCCATCATCTTTTTCCTCACTGGCATCATCGCCATTAT
CCAGCGTTAAGCCGCATTATCGCTCAAATTGCCAGCCAGCAAGGTCTGGATTATCAGTTGTTGACGTTAGCGGATTTGTT
GAGGCTACAGCAGCAGTTTTTACGGCGAATGGGGGAGAAGCCGATAGACTGA

Upstream 100 bases:

>100_bases
TCGTGGAGCACTCTGCTCTGGAAGGGATTAGCGGGCATTTTGCTGGCCCATTGTGTGTTATTCCTAATCGGTGTAGGACG
TAAGTCGTTAAGGAAACGCT

Downstream 100 bases:

>100_bases
GAATGGAATCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTACGGGTCGTTGCCTGCGGCAA
CGCTCTCTCGCTGGCGCTCG

Product: Linoleoyl-CoA desaturase

Products: NA

Alternate protein names: Delta(6)-desaturase [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNLFNPDRLITFPADDPQLVKQLQNDTKVYLAKSCDHRYADGWAFTKMAALIIACLCCYSLALSQSQWGLYLLWYLAMMF
CAMLLAVNVVHDASHDAFLRGKKANAWLNRWVAFPMGLDPDCWRVRHVRFHHGFTNIEFYDPDTAENGILRQTPWQRWRP
FMRQQHRYWPLVAALTFPWYIWVVDWFDRAGFTPVTRHLALRGFAGWGYFLAGKLAHCVLCLILPWLLSEFNFMTILLTY
LLSQLLASLIFVMLIIGTHWAKGHTQLPPEEGKMAVGRLAHTFATTFDWTPQPAWLGYWLGGINLHLTHHLFPHWHHRHY
PALSRIIAQIASQQGLDYQLLTLADLLRLQQQFLRRMGEKPID

Sequences:

>Translated_363_residues
MNLFNPDRLITFPADDPQLVKQLQNDTKVYLAKSCDHRYADGWAFTKMAALIIACLCCYSLALSQSQWGLYLLWYLAMMF
CAMLLAVNVVHDASHDAFLRGKKANAWLNRWVAFPMGLDPDCWRVRHVRFHHGFTNIEFYDPDTAENGILRQTPWQRWRP
FMRQQHRYWPLVAALTFPWYIWVVDWFDRAGFTPVTRHLALRGFAGWGYFLAGKLAHCVLCLILPWLLSEFNFMTILLTY
LLSQLLASLIFVMLIIGTHWAKGHTQLPPEEGKMAVGRLAHTFATTFDWTPQPAWLGYWLGGINLHLTHHLFPHWHHRHY
PALSRIIAQIASQQGLDYQLLTLADLLRLQQQFLRRMGEKPID
>Mature_363_residues
MNLFNPDRLITFPADDPQLVKQLQNDTKVYLAKSCDHRYADGWAFTKMAALIIACLCCYSLALSQSQWGLYLLWYLAMMF
CAMLLAVNVVHDASHDAFLRGKKANAWLNRWVAFPMGLDPDCWRVRHVRFHHGFTNIEFYDPDTAENGILRQTPWQRWRP
FMRQQHRYWPLVAALTFPWYIWVVDWFDRAGFTPVTRHLALRGFAGWGYFLAGKLAHCVLCLILPWLLSEFNFMTILLTY
LLSQLLASLIFVMLIIGTHWAKGHTQLPPEEGKMAVGRLAHTFATTFDWTPQPAWLGYWLGGINLHLTHHLFPHWHHRHY
PALSRIIAQIASQQGLDYQLLTLADLLRLQQQFLRRMGEKPID

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.19.3 [H]

Molecular weight: Translated: 42376; Mature: 42376

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFNPDRLITFPADDPQLVKQLQNDTKVYLAKSCDHRYADGWAFTKMAALIIACLCCYS
CCCCCCCCEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
LALSQSQWGLYLLWYLAMMFCAMLLAVNVVHDASHDAFLRGKKANAWLNRWVAFPMGLDP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCC
DCWRVRHVRFHHGFTNIEFYDPDTAENGILRQTPWQRWRPFMRQQHRYWPLVAALTFPWY
CHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
IWVVDWFDRAGFTPVTRHLALRGFAGWGYFLAGKLAHCVLCLILPWLLSEFNFMTILLTY
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSQLLASLIFVMLIIGTHWAKGHTQLPPEEGKMAVGRLAHTFATTFDWTPQPAWLGYWL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
GGINLHLTHHLFPHWHHRHYPALSRIIAQIASQQGLDYQLLTLADLLRLQQQFLRRMGEK
CCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
PID
CCC
>Mature Secondary Structure
MNLFNPDRLITFPADDPQLVKQLQNDTKVYLAKSCDHRYADGWAFTKMAALIIACLCCYS
CCCCCCCCEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
LALSQSQWGLYLLWYLAMMFCAMLLAVNVVHDASHDAFLRGKKANAWLNRWVAFPMGLDP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCC
DCWRVRHVRFHHGFTNIEFYDPDTAENGILRQTPWQRWRPFMRQQHRYWPLVAALTFPWY
CHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
IWVVDWFDRAGFTPVTRHLALRGFAGWGYFLAGKLAHCVLCLILPWLLSEFNFMTILLTY
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSQLLASLIFVMLIIGTHWAKGHTQLPPEEGKMAVGRLAHTFATTFDWTPQPAWLGYWL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
GGINLHLTHHLFPHWHHRHYPALSRIIAQIASQQGLDYQLLTLADLLRLQQQFLRRMGEK
CCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
PID
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8389613; 8905231 [H]