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The map label for this gene is oppB [H]

Identifier: 218549063

GI number: 218549063

Start: 1756936

End: 1757856

Strand: Reverse

Name: oppB [H]

Synonym: EFER_1711

Alternate gene names: 218549063

Gene position: 1757856-1756936 (Counterclockwise)

Preceding gene: 218549064

Following gene: 218549062

Centisome position: 38.31

GC content: 47.12

Gene sequence:

>921_bases
ATGTTAAAATTTATTATACGTCGCTTTCTGGAAGCGATACCGACGCTATTTATACTCATTACCATTTCGTTTTTTATGAT
GCGCCTTGCACCAGGGAGTCCTTTCACTGGCGAGCGTACACTGCCGCCTGAAGTTATGGCGAATATTGAAGCGAAATATC
ACTTAAACGATCCGATCTCCACCCAGTACTTCAGCTACCTGAAACAGCTGGCACATGGCGATTTTGGACCATCCTTTAAA
TATAAAGATTACTCGGTCAACGATCTGCTGGCGACCAGTTTCCCGGTTTCGGCGAAATTAGGCGCAGCGGCATTTTTACT
CGCCGTTATTCTTGGCGTTAGCGCGGGCGTTATTGCTGCGTTAAAACAAAACACCCGATGGGATTATATGGTTATGGGAG
TGGCGATGACCGGGGTCGTTATCCCCAGTTTTGTTGTTGCCCCCTTATTGGTGATGATATTTGCGATTACGCTCCAGTGG
TTGCCTGGCGGTGGCTGGAATGGTGGGGCTTTGAAATTTATGATTTTGCCAATGGTGGCATTATCGCTTGCCTATATCGC
CAGCATCGCTCGTATTACGCGTGGCTCAATGATTGAAGTATTGCACTCTAACTTTATCCGTACTGCCAGGGCGAAGGGGT
TACCAATGCGTCGGATTATATTCCGCCATGCATTGAAACCCGCTCTATTACCGGTGCTCTCCTATATGGGGCCTGCTTTT
GTCGGCATCATCACTGGTTCTATGGTTATCGAAACCATTTACGGATTGCCAGGTATTGGTCAGCTTTTCGTCAATGGCGC
ACTTAACCGCGACTACTCGTTGGTGCTCAGTCTGACCATTTTGGTGGGAACGCTGACAATTGTATTTAACGCCATTGTCG
ATGTGCTGTATGCAGTTATCGACCCAAAAATTCGTTACTGA

Upstream 100 bases:

>100_bases
CATTGTGAAGCACTAATGGCAATACGTGGAGCAGGTCATATCTGCTCCACGGTGTCTGTTTTTTTCGCATTTTTGAAGGC
ACAGGCCAAAAGGTACGGCA

Downstream 100 bases:

>100_bases
TACTGGAGCCTGCGATGATGTTAAGTAAGAAAAACAGCGAGGCGCTGGAAAATTTCAGTGACAAGCTGGAAGTTGAAGGG
CGTAGTCTATGGCAGGATGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIIRRFLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPISTQYFSYLKQLAHGDFGPSFK
YKDYSVNDLLATSFPVSAKLGAAAFLLAVILGVSAGVIAALKQNTRWDYMVMGVAMTGVVIPSFVVAPLLVMIFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFIIRRFLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPISTQYFSYLKQLAHGDFGPSFK
YKDYSVNDLLATSFPVSAKLGAAAFLLAVILGVSAGVIAALKQNTRWDYMVMGVAMTGVVIPSFVVAPLLVMIFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFIIRRFLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPISTQYFSYLKQLAHGDFGPSFK
YKDYSVNDLLATSFPVSAKLGAAAFLLAVILGVSAGVIAALKQNTRWDYMVMGVAMTGVVIPSFVVAPLLVMIFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=95.4248366013072, Blast_Score=585, Evalue=1e-168,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.5987055016181, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=33.7278106508876, Blast_Score=190, Evalue=8e-50,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=35.4838709677419, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=31.3291139240506, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=30.0751879699248, Blast_Score=127, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33511; Mature: 33511

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIIRRFLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCCCC
TQYFSYLKQLAHGDFGPSFKYKDYSVNDLLATSFPVSAKLGAAAFLLAVILGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYMVMGVAMTGVVIPSFVVAPLLVMIFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFIIRRFLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCCCC
TQYFSYLKQLAHGDFGPSFKYKDYSVNDLLATSFPVSAKLGAAAFLLAVILGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYMVMGVAMTGVVIPSFVVAPLLVMIFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]