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The map label for this gene is opuCB [H]

Identifier: 218548809

GI number: 218548809

Start: 1490437

End: 1491171

Strand: Reverse

Name: opuCB [H]

Synonym: EFER_1448

Alternate gene names: 218548809

Gene position: 1491171-1490437 (Counterclockwise)

Preceding gene: 218548811

Following gene: 218548808

Centisome position: 32.5

GC content: 49.52

Gene sequence:

>735_bases
ATGCAAACAGGGAGAGACATCGCAATGCACACACCCACGGTAAAACGCGTGTTGGGTTTCACGTTCATCGTCCTTTTAGT
TATGGCAATTCTTATCTGGGGCGTGGGACTGGAAACACTAAAAGCACGTCAGGTAGATTTGATTTATCTCGGTCAACAAC
ATCTTTTTTTAGTCTTCACATCACTCTTTTTTGCCCTACTGATCGGCGTTCCCAGTGGTATTTTGCTTAGCCGTCCGGCT
GCCAGAGGATTTGCTGAACATGCAATGCAAATCTTTAATGTCGGTAATACCCTCCCACCGCTCGCTGTTCTGGCGCTGGC
AATGATTATCCTTGGTATTGGTGATACTCCGGCGATTGTGGCCCTTTTCCTCGCTTCGCTGCTTCCTATTGTTCGCAATA
CATATGCCGGGCTGAACGCCGTCCCCGCATCACTTAAAGAAGCGGCTAAAGGGATCGGCATGACCAGATGGCAACGCTTG
TACCTGGTGGAATTGCCTAACGCATGGCCAGTCATGCTTTCTGGTATTCGTATTGCAGCGGCAATTATTGTCGGCACAGC
ACCTCTGGCATTTTTGATTGGTGCCAGTAGTTATGGAGAGCTGATCTTTCCAGGGATTTATTTGAATGATTTCCCAACAC
TGATTCTTGGCGCTACCGCAACGGCGCTCTTTGCGCTAATCCTCGATTCGTTGCTCGCCTGGCTGGGACGTGCTCTTAGC
CCACACACTGCCTGA

Upstream 100 bases:

>100_bases
TTGCCGCTTCGCTGGAATCCTGCCCGACCCGTTGCTATAGGTCAAAACACCCTGCCGCTCATGGCATAACAACATGCAGC
GCTATTCGCTGCCATAACAC

Downstream 100 bases:

>100_bases
TTAAAACGATAATACGGAGCATTTATGAATCTTAAAAAACACCTGCTGGGATGGCTGGCTGCGGCTTTTTTGCTGAGCGG
ACAAAGCCAGGCCGCACCCA

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MQTGRDIAMHTPTVKRVLGFTFIVLLVMAILIWGVGLETLKARQVDLIYLGQQHLFLVFTSLFFALLIGVPSGILLSRPA
ARGFAEHAMQIFNVGNTLPPLAVLALAMIILGIGDTPAIVALFLASLLPIVRNTYAGLNAVPASLKEAAKGIGMTRWQRL
YLVELPNAWPVMLSGIRIAAAIIVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALS
PHTA

Sequences:

>Translated_244_residues
MQTGRDIAMHTPTVKRVLGFTFIVLLVMAILIWGVGLETLKARQVDLIYLGQQHLFLVFTSLFFALLIGVPSGILLSRPA
ARGFAEHAMQIFNVGNTLPPLAVLALAMIILGIGDTPAIVALFLASLLPIVRNTYAGLNAVPASLKEAAKGIGMTRWQRL
YLVELPNAWPVMLSGIRIAAAIIVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALS
PHTA
>Mature_244_residues
MQTGRDIAMHTPTVKRVLGFTFIVLLVMAILIWGVGLETLKARQVDLIYLGQQHLFLVFTSLFFALLIGVPSGILLSRPA
ARGFAEHAMQIFNVGNTLPPLAVLALAMIILGIGDTPAIVALFLASLLPIVRNTYAGLNAVPASLKEAAKGIGMTRWQRL
YLVELPNAWPVMLSGIRIAAAIIVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALS
PHTA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=200, Percent_Identity=43.5, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788451, Length=195, Percent_Identity=37.9487179487179, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789033, Length=175, Percent_Identity=31.4285714285714, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786564, Length=165, Percent_Identity=34.5454545454545, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26054; Mature: 26054

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGRDIAMHTPTVKRVLGFTFIVLLVMAILIWGVGLETLKARQVDLIYLGQQHLFLVFT
CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEECHHHHHHHHH
SLFFALLIGVPSGILLSRPAARGFAEHAMQIFNVGNTLPPLAVLALAMIILGIGDTPAIV
HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHH
ALFLASLLPIVRNTYAGLNAVPASLKEAAKGIGMTRWQRLYLVELPNAWPVMLSGIRIAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHEEEEEECCCCHHHHHHHHHHHH
AIIVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALS
HHHHHHHHHHHHHCCCCCCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHTA
CCCC
>Mature Secondary Structure
MQTGRDIAMHTPTVKRVLGFTFIVLLVMAILIWGVGLETLKARQVDLIYLGQQHLFLVFT
CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEECHHHHHHHHH
SLFFALLIGVPSGILLSRPAARGFAEHAMQIFNVGNTLPPLAVLALAMIILGIGDTPAIV
HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHH
ALFLASLLPIVRNTYAGLNAVPASLKEAAKGIGMTRWQRLYLVELPNAWPVMLSGIRIAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHEEEEEECCCCHHHHHHHHHHHH
AIIVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALS
HHHHHHHHHHHHHCCCCCCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHTA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]