Click here to switch to the map view.

The map label for this gene is ydgD [H]

Identifier: 218548798

GI number: 218548798

Start: 1479994

End: 1480815

Strand: Reverse

Name: ydgD [H]

Synonym: EFER_1437

Alternate gene names: 218548798

Gene position: 1480815-1479994 (Counterclockwise)

Preceding gene: 218548799

Following gene: 218548794

Centisome position: 32.27

GC content: 51.46

Gene sequence:

>822_bases
ATGCGTAAAACCGTTGCTGTATTGCTGGGATCTGTTTGTCTTACTGCGATGAATTATGTTGCCAACGAGGCTGCTGCCAC
CACAACGAATGCGGATGAGGTTAAAACCCTTTTTTTTGGTCAGGATGATCGCGTTCCGGTTAATGCTCCGGGCAAATCGC
CCTGGGATGCCATTGGTCAGCTGGAAACCGCCAGTGGAAATCTGTGTACCGCAACGCTTATTGCGCCAAATCTGGCTCTC
ACTGCCGGACACTGTTTACTGACGCCTCCCGGTGGCAAACTGGATAAACCTGTCGCCCTACGGTTTATTTCCAGTAAAGG
GGTATGGCGCTATGAAATTCATGGTATTGAAGGTCGGGTTGATCCGGGGCTTGGTAAACGACTGAAAGCAGATGGTGATG
GCTGGATTGTACCGCCTGCAGCAGCTCCATGGGATTTTGGCTTGATCGTGCTTCGTTATCCGCCTTCCGGTATCACGCCT
TTGCCACTTTTTTCTGGTGATAAAGCCGCACTGACCGCAGCTTTAAAAGCTGCAGATCGCAAGGTAACGCAATCAGGTTA
CCCGGAAGATCATCTTGATTCGCTCTACGCACATCAGGATTGTGTGATCACCGGGTGGGCGCAAACGTCTGTGATGTCTC
ATCAGTGCGATACGCTTCCTGGTGACAGCGGTTCCCCCTTGATGTTGCATACGGATGATGGCTGGCAGGTTATCGGCGTA
CAAAGTTCGGCACCAGCGGCAAAAGATCGCTGGCGTGCAGACAATCGCGCTATTTCAGTCACCGGATTTCGTGAAAAATT
ACAGGCTCTGGCTCAGCAATGA

Upstream 100 bases:

>100_bases
GCGTAGTTGTCTGATTTTATTACCACTATCTTTGTGTCCCGTATATAGTTAATAGCAAGGGTATAGCTTTCATAATCATA
ATTCCCCATCAGAGTGAACT

Downstream 100 bases:

>100_bases
CGCTGCTGGCGTAATTGCATCAGTGATTCTATCGGCATCGGCTGGCTGAAATAAAAGCCCTGTAAACGGTCGCAGCCAGC
CAGGCGTAATAGTTTCATCT

Product: metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRKTVAVLLGSVCLTAMNYVANEAAATTTNADEVKTLFFGQDDRVPVNAPGKSPWDAIGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPGGKLDKPVALRFISSKGVWRYEIHGIEGRVDPGLGKRLKADGDGWIVPPAAAPWDFGLIVLRYPPSGITP
LPLFSGDKAALTAALKAADRKVTQSGYPEDHLDSLYAHQDCVITGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQVIGV
QSSAPAAKDRWRADNRAISVTGFREKLQALAQQ

Sequences:

>Translated_273_residues
MRKTVAVLLGSVCLTAMNYVANEAAATTTNADEVKTLFFGQDDRVPVNAPGKSPWDAIGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPGGKLDKPVALRFISSKGVWRYEIHGIEGRVDPGLGKRLKADGDGWIVPPAAAPWDFGLIVLRYPPSGITP
LPLFSGDKAALTAALKAADRKVTQSGYPEDHLDSLYAHQDCVITGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQVIGV
QSSAPAAKDRWRADNRAISVTGFREKLQALAQQ
>Mature_273_residues
MRKTVAVLLGSVCLTAMNYVANEAAATTTNADEVKTLFFGQDDRVPVNAPGKSPWDAIGQLETASGNLCTATLIAPNLAL
TAGHCLLTPPGGKLDKPVALRFISSKGVWRYEIHGIEGRVDPGLGKRLKADGDGWIVPPAAAPWDFGLIVLRYPPSGITP
LPLFSGDKAALTAALKAADRKVTQSGYPEDHLDSLYAHQDCVITGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQVIGV
QSSAPAAKDRWRADNRAISVTGFREKLQALAQQ

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=273, Percent_Identity=81.3186813186813, Blast_Score=442, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29038; Mature: 29038

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTVAVLLGSVCLTAMNYVANEAAATTTNADEVKTLFFGQDDRVPVNAPGKSPWDAIGQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCEECCCCCCCHHHHHCC
LETASGNLCTATLIAPNLALTAGHCLLTPPGGKLDKPVALRFISSKGVWRYEIHGIEGRV
EECCCCCEEEEEEECCCEEEECCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCC
DPGLGKRLKADGDGWIVPPAAAPWDFGLIVLRYPPSGITPLPLFSGDKAALTAALKAADR
CCCCCCEEECCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHHHHH
KVTQSGYPEDHLDSLYAHQDCVITGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQVIGV
HHHCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEE
QSSAPAAKDRWRADNRAISVTGFREKLQALAQQ
CCCCCCHHHHHCCCCCEEEEECHHHHHHHHHCC
>Mature Secondary Structure
MRKTVAVLLGSVCLTAMNYVANEAAATTTNADEVKTLFFGQDDRVPVNAPGKSPWDAIGQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCEECCCCCCCHHHHHCC
LETASGNLCTATLIAPNLALTAGHCLLTPPGGKLDKPVALRFISSKGVWRYEIHGIEGRV
EECCCCCEEEEEEECCCEEEECCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCC
DPGLGKRLKADGDGWIVPPAAAPWDFGLIVLRYPPSGITPLPLFSGDKAALTAALKAADR
CCCCCCEEECCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHHHHH
KVTQSGYPEDHLDSLYAHQDCVITGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQVIGV
HHHCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEE
QSSAPAAKDRWRADNRAISVTGFREKLQALAQQ
CCCCCCHHHHHCCCCCEEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]