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The map label for this gene is yobA [H]

Identifier: 218548598

GI number: 218548598

Start: 1273380

End: 1273754

Strand: Direct

Name: yobA [H]

Synonym: EFER_1232

Alternate gene names: 218548598

Gene position: 1273380-1273754 (Clockwise)

Preceding gene: 218548594

Following gene: 218548599

Centisome position: 27.75

GC content: 48.53

Gene sequence:

>375_bases
ATGGCTTCATCTGTAAAAAAAATTTGCTGGACTGTTCTGTTTGTTGTTACTGCACTGATTCCACCAGCTTCATGGGCTCA
TGCCCATCTGACTCACCAGTATCCTGCCGCTGATGCAGAAGTGACCGCAGCTCCCCAGGCGCTGACATTGAATTTTTCGG
AAGGCATCGAACCGGGATTTAGCGGTGCCACCCTCACGGGCCCGAAACAAGAAGTTATTAAACTTCGCCCGGCAAAGCGT
AACGAACAGGATAAATCACAACTGATTGTGCCACTGGATGAATCACTCAAGCCCGGAAAATATACCGTGGACTGGCATGT
TGTGTCTGTGGACGGGCATAAAACCAAAGGGCAATACACCTTTAGCGTGAAATAA

Upstream 100 bases:

>100_bases
GAGAAGCGTTCGATAGCAAGTCTGAGTTGATGATTCTCGACTCATTCATTATTGAAGGTTATGCTCTTGCTAATAAGTTA
TTACAAAAGGGAATGTAAAT

Downstream 100 bases:

>100_bases
CCATGCTGATGTTTACCTGGATTGTGCTGCGCTTCATCCACTTTGCTGCGTTAATGCTGATCTTTGGCTATGCCTTGTAC
GGAGCATGGCTGGCTCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MASSVKKICWTVLFVVTALIPPASWAHAHLTHQYPAADAEVTAAPQALTLNFSEGIEPGFSGATLTGPKQEVIKLRPAKR
NEQDKSQLIVPLDESLKPGKYTVDWHVVSVDGHKTKGQYTFSVK

Sequences:

>Translated_124_residues
MASSVKKICWTVLFVVTALIPPASWAHAHLTHQYPAADAEVTAAPQALTLNFSEGIEPGFSGATLTGPKQEVIKLRPAKR
NEQDKSQLIVPLDESLKPGKYTVDWHVVSVDGHKTKGQYTFSVK
>Mature_123_residues
ASSVKKICWTVLFVVTALIPPASWAHAHLTHQYPAADAEVTAAPQALTLNFSEGIEPGFSGATLTGPKQEVIKLRPAKRN
EQDKSQLIVPLDESLKPGKYTVDWHVVSVDGHKTKGQYTFSVK

Specific function: Unknown

COG id: COG2372

COG function: function code R; Uncharacterized protein, homolog of Cu resistance protein CopC

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopC family [H]

Homologues:

Organism=Escherichia coli, GI1788146, Length=124, Percent_Identity=71.7741935483871, Blast_Score=193, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC [H]

EC number: NA

Molecular weight: Translated: 13524; Mature: 13392

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSVKKICWTVLFVVTALIPPASWAHAHLTHQYPAADAEVTAAPQALTLNFSEGIEPGF
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEECCCEEEEEECCCCCCCCC
SGATLTGPKQEVIKLRPAKRNEQDKSQLIVPLDESLKPGKYTVDWHVVSVDGHKTKGQYT
CCCCCCCCHHHEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEE
FSVK
EEEC
>Mature Secondary Structure 
ASSVKKICWTVLFVVTALIPPASWAHAHLTHQYPAADAEVTAAPQALTLNFSEGIEPGF
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEECCCEEEEEECCCCCCCCC
SGATLTGPKQEVIKLRPAKRNEQDKSQLIVPLDESLKPGKYTVDWHVVSVDGHKTKGQYT
CCCCCCCCHHHEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEE
FSVK
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]