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The map label for this gene is torR [H]

Identifier: 218548558

GI number: 218548558

Start: 1231716

End: 1232408

Strand: Reverse

Name: torR [H]

Synonym: EFER_1190

Alternate gene names: 218548558

Gene position: 1232408-1231716 (Counterclockwise)

Preceding gene: 218548565

Following gene: 218548556

Centisome position: 26.86

GC content: 52.53

Gene sequence:

>693_bases
ATGCCACATCACATTGTTATTGTTGAAGATGAGCCGGTTACCCAGGCGCGATTACAAACCTACTTCACTCAGGAGGGGTA
TACGGTTTCCGTTACGGCGAGCGGTGCCGGGCTGCGTGAAATTATGCAAAACCAGCCAGTGGATTTAATTCTGCTGGATA
TCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGGGAACGTTCGACGGTGGGTATTATTCTGGTTACC
GGACGCAGCGATCGGATTGACCGTATTGTTGGGCTGGAAATGGGCGCAGACGATTACGTTACCAAACCGCTGGAACTGCG
CGAACTGGTGGTACGGGTGAAAAATCTGCTCTGGCGAATCGACCTCGCGCGACAAGCTCAACCGCTCACTCAGGACAACT
GCTATCGCTTTGCCGGTTATTGCCTGAATGTGTCGCGCCATACGCTGGAGCTTGATGGCGAACCGATTAAACTAACCCGC
GCAGAGTATGAAATGTTGGTGGCATTTGTGACCAATCCGGGCGAAATTCTCAGCCGTGAACGTCTGCTGCGTATGCTTTC
TGCGCGCCGGGTGGAAAACCCCGACCTGCGCACCGTCGATGTGTTAATTCGTCGTTTACGTCATAAACTCAGCGCGGATT
TACTGGTGACACAACATGGCGAAGGTTATTTCTTAGCCGCTGATGTGTGCTGA

Upstream 100 bases:

>100_bases
AAGCGATCTTAATAAGCAAATATGAACAGCGGCACTGGTCAGGATGAACGGCTTACGGCAGAATATGAACAGATATGAAC
AGAATGAGTAAAACTCTCTG

Downstream 100 bases:

>100_bases
TAAAAATAGACCGGACGAAATCCCCCTGGTGACAGCGAGCGGCGGATATGTTCGCGGTCGGCATTTTTCGGCGTCAGGAC
TAAAATCGGTGGGCTGACAT

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPHHIVIVEDEPVTQARLQTYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLELDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Sequences:

>Translated_230_residues
MPHHIVIVEDEPVTQARLQTYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLELDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>Mature_229_residues
PHHIVIVEDEPVTQARLQTYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTG
RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLELDGEPIKLTRA
EYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=98.2608695652174, Blast_Score=456, Evalue=1e-130,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=42.0600858369099, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=33.6206896551724, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=36.480686695279, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=34.3612334801762, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=32.9004329004329, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=31.7180616740088, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=31.6017316017316, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=30.2631578947368, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=30.3964757709251, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=30.0448430493274, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=29.9559471365639, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=30.6666666666667, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=29.7413793103448, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26191; Mature: 26060

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHHIVIVEDEPVTQARLQTYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCCEEEEECCCCCHHHHHHHHEECCCEEEEEEECCCCHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CEEHHHHHHCCCCEEEEEEECCCCCCHHEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
DLARQAQPLTQDNCYRFAGYCLNVSRHTLELDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCCCCCCCEEEHEEEECCCEEEEECCCCEEEEHHCEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECC
>Mature Secondary Structure 
PHHIVIVEDEPVTQARLQTYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCEEEEECCCCCHHHHHHHHEECCCEEEEEEECCCCHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CEEHHHHHHCCCCEEEEEEECCCCCCHHEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
DLARQAQPLTQDNCYRFAGYCLNVSRHTLELDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCCCCCCCEEEHEEEECCCEEEEECCCCEEEEHHCEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]