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The map label for this gene is fliD [H]

Identifier: 218548539

GI number: 218548539

Start: 1209416

End: 1210822

Strand: Reverse

Name: fliD [H]

Synonym: EFER_1169

Alternate gene names: 218548539

Gene position: 1210822-1209416 (Counterclockwise)

Preceding gene: 218548548

Following gene: 218548538

Centisome position: 26.39

GC content: 46.7

Gene sequence:

>1407_bases
ATGGCTTCGTTTACTTCGTTGGGTGTTGGCTCTAATTTACCGCTGGATACATTACTGACGAACCTGACTACCGCAGAGAA
AAAACGCTTAACGCCCATTACTCAACAGCAGAGCAGCAATACCGCCCGGTTGACGGCATTTGGCACCTTAAAAAGCTCGT
TGGAGAAATTCCAGACAGCGAATACTGCTTTAAACGATGCCGCCCTTTTTAAAAGCACCACAGCGGTCAGCTCCTCGACG
GATTTAACCGTCAGCACCACTGCCGGTGCCGCTGCCGGGATTTATAAAATCAGCGTCAGCCAACTGGCGCAGGCGCAGTC
TATTCGCACCACGACACCCGTCACCGACAGCAAAGCCATTCAGGGTAATAGCAACAGCGAACGTACGCTGGTTATCAAGC
AGGATGGCAAAGACAAGCCGCTGGAAATTAAGCTCACCAGTGAACAAACCTCTCTGGAGGGGCTGCGTGATGCCATTAAC
AATGCCGATGGTGGGGTTTCTGCCAGCATTGTGAAAGTGAAAGATAATGACTATCAACTGGTTTTAACCTCATCAGAAAC
AGGTCTGGAAAATCAGATGAGTGTTTCAGTACAAGGTGATGACAAATTAAACCAGTTTATTAGCTTTAATAACCCGGACG
TCACCGGAAATAACGTCGAACAAATTGTCGAAGCGCAGGACGCCAAACTTAGCGTAAACGGGATTAATATCGAGCGCAGC
AGCAATACCATTACCGATGCGCCACAAGGAATTACGCTAAACCTGACAAAAGTCGTCGATGACGTCACGATCACCGTCAA
TAAAAGTGATGAAAAATCTACCAGCGCAATTAAAGCATGGGTTGAGGCATATAACTCTCTGGTCGATACCATCGGTTCAC
TGACTAAATATACGGCAGTTGATCCTGGCGCTGAAAAACAAGATACCAGTAATGGCGCATTGTTGGGTGACAGCACCGTG
CGCACAATCCAAACCGGTATTCGCGGGCAATTTTCTGCCAGTGCCAACAGCGGTAATTTTCAAACATTATCGCAAATCGG
CATTACCCAGGACGGGACCACCGGCAAATTAAAAATTGATGACGATAAACTGAAAAAAGCGCTTAGCGAACATTCGGTTG
ATGTTCAGCAATTATTAGTTGGTGATGGTAAAGAAACCGGTATTACCACCAAAATTGCCGGGCTGGTAAAAGGCTATCTG
GCTGATGACGGTATTATCGACAGCGCGCAGGACAGTATTAACAGCACACTGAAAAAATTAACCAAACAGTATCTTTCTGT
CAGTGCCAGCATCGATGACACTATCGCCCGCTATCAGGCGCAGTTTACCCAGCTCGATACCATGATGAGCAAACTGAATA
ACACCAGCACTTACTTAACCCAACAATTTGAAGCTATGAGCAGCTAA

Upstream 100 bases:

>100_bases
CACTATTCCGCGCATTATCAACGCCCCTTTTTCCTTAAACTTTGGCGAAAGATTGCCGATAACGCACTTATCTTCTGTTT
GCAATCAAAAGGAATAAGGC

Downstream 100 bases:

>100_bases
TCAAAACATGAGGTAACTATGTCTACCGCGAGCGGTATCCAAGCGTATGCGCAAGTCGGTGTGGAAAGTGGCGTGATGAG
CGCCAGTCCACATCAGTTGA

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MASFTSLGVGSNLPLDTLLTNLTTAEKKRLTPITQQQSSNTARLTAFGTLKSSLEKFQTANTALNDAALFKSTTAVSSST
DLTVSTTAGAAAGIYKISVSQLAQAQSIRTTTPVTDSKAIQGNSNSERTLVIKQDGKDKPLEIKLTSEQTSLEGLRDAIN
NADGGVSASIVKVKDNDYQLVLTSSETGLENQMSVSVQGDDKLNQFISFNNPDVTGNNVEQIVEAQDAKLSVNGINIERS
SNTITDAPQGITLNLTKVVDDVTITVNKSDEKSTSAIKAWVEAYNSLVDTIGSLTKYTAVDPGAEKQDTSNGALLGDSTV
RTIQTGIRGQFSASANSGNFQTLSQIGITQDGTTGKLKIDDDKLKKALSEHSVDVQQLLVGDGKETGITTKIAGLVKGYL
ADDGIIDSAQDSINSTLKKLTKQYLSVSASIDDTIARYQAQFTQLDTMMSKLNNTSTYLTQQFEAMSS

Sequences:

>Translated_468_residues
MASFTSLGVGSNLPLDTLLTNLTTAEKKRLTPITQQQSSNTARLTAFGTLKSSLEKFQTANTALNDAALFKSTTAVSSST
DLTVSTTAGAAAGIYKISVSQLAQAQSIRTTTPVTDSKAIQGNSNSERTLVIKQDGKDKPLEIKLTSEQTSLEGLRDAIN
NADGGVSASIVKVKDNDYQLVLTSSETGLENQMSVSVQGDDKLNQFISFNNPDVTGNNVEQIVEAQDAKLSVNGINIERS
SNTITDAPQGITLNLTKVVDDVTITVNKSDEKSTSAIKAWVEAYNSLVDTIGSLTKYTAVDPGAEKQDTSNGALLGDSTV
RTIQTGIRGQFSASANSGNFQTLSQIGITQDGTTGKLKIDDDKLKKALSEHSVDVQQLLVGDGKETGITTKIAGLVKGYL
ADDGIIDSAQDSINSTLKKLTKQYLSVSASIDDTIARYQAQFTQLDTMMSKLNNTSTYLTQQFEAMSS
>Mature_467_residues
ASFTSLGVGSNLPLDTLLTNLTTAEKKRLTPITQQQSSNTARLTAFGTLKSSLEKFQTANTALNDAALFKSTTAVSSSTD
LTVSTTAGAAAGIYKISVSQLAQAQSIRTTTPVTDSKAIQGNSNSERTLVIKQDGKDKPLEIKLTSEQTSLEGLRDAINN
ADGGVSASIVKVKDNDYQLVLTSSETGLENQMSVSVQGDDKLNQFISFNNPDVTGNNVEQIVEAQDAKLSVNGINIERSS
NTITDAPQGITLNLTKVVDDVTITVNKSDEKSTSAIKAWVEAYNSLVDTIGSLTKYTAVDPGAEKQDTSNGALLGDSTVR
TIQTGIRGQFSASANSGNFQTLSQIGITQDGTTGKLKIDDDKLKKALSEHSVDVQQLLVGDGKETGITTKIAGLVKGYLA
DDGIIDSAQDSINSTLKKLTKQYLSVSASIDDTIARYQAQFTQLDTMMSKLNNTSTYLTQQFEAMSS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=465, Percent_Identity=52.0430107526882, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 49705; Mature: 49574

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFTSLGVGSNLPLDTLLTNLTTAEKKRLTPITQQQSSNTARLTAFGTLKSSLEKFQTA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHH
NTALNDAALFKSTTAVSSSTDLTVSTTAGAAAGIYKISVSQLAQAQSIRTTTPVTDSKAI
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCEEEEEHHHHHHHHHCCCCCCCCCCCEE
QGNSNSERTLVIKQDGKDKPLEIKLTSEQTSLEGLRDAINNADGGVSASIVKVKDNDYQL
CCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE
VLTSSETGLENQMSVSVQGDDKLNQFISFNNPDVTGNNVEQIVEAQDAKLSVNGINIERS
EEECCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECC
SNTITDAPQGITLNLTKVVDDVTITVNKSDEKSTSAIKAWVEAYNSLVDTIGSLTKYTAV
CCCCCCCCCCEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPGAEKQDTSNGALLGDSTVRTIQTGIRGQFSASANSGNFQTLSQIGITQDGTTGKLKID
CCCCCCCCCCCCEEECCCHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCEEEEC
DDKLKKALSEHSVDVQQLLVGDGKETGITTKIAGLVKGYLADDGIIDSAQDSINSTLKKL
HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TKQYLSVSASIDDTIARYQAQFTQLDTMMSKLNNTSTYLTQQFEAMSS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ASFTSLGVGSNLPLDTLLTNLTTAEKKRLTPITQQQSSNTARLTAFGTLKSSLEKFQTA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHH
NTALNDAALFKSTTAVSSSTDLTVSTTAGAAAGIYKISVSQLAQAQSIRTTTPVTDSKAI
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCEEEEEHHHHHHHHHCCCCCCCCCCCEE
QGNSNSERTLVIKQDGKDKPLEIKLTSEQTSLEGLRDAINNADGGVSASIVKVKDNDYQL
CCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE
VLTSSETGLENQMSVSVQGDDKLNQFISFNNPDVTGNNVEQIVEAQDAKLSVNGINIERS
EEECCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECC
SNTITDAPQGITLNLTKVVDDVTITVNKSDEKSTSAIKAWVEAYNSLVDTIGSLTKYTAV
CCCCCCCCCCEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPGAEKQDTSNGALLGDSTVRTIQTGIRGQFSASANSGNFQTLSQIGITQDGTTGKLKID
CCCCCCCCCCCCEEECCCHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCEEEEC
DDKLKKALSEHSVDVQQLLVGDGKETGITTKIAGLVKGYLADDGIIDSAQDSINSTLKKL
HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TKQYLSVSASIDDTIARYQAQFTQLDTMMSKLNNTSTYLTQQFEAMSS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2193164; 11677609; 1527488; 9878359; 11118149 [H]