Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
---|---|
Accession | NC_011740 |
Length | 4,588,711 |
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The map label for this gene is rcsD [H]
Identifier: 218548323
GI number: 218548323
Start: 969124
End: 971997
Strand: Reverse
Name: rcsD [H]
Synonym: EFER_0944
Alternate gene names: 218548323
Gene position: 971997-969124 (Counterclockwise)
Preceding gene: 218548330
Following gene: 218548322
Centisome position: 21.18
GC content: 45.72
Gene sequence:
>2874_bases TTGTTATTTTCATATATTTTCTTATTCGTTCTGTTCTTTATTTGTACACCAGAACGAAATTTGTACATATCCCCATCACA GGGCAGCTCATTAATATTACTGATAAATATCACTCCCGTTGTGTTCAGAGGGTGTGGAAATTCATCTCATAGCCTTTATA CTGCTTTTCACTTTTACGATGTTTTTAACAGGTCACCAACACCAATGAGTCAGTCTGACACAACGGCTACATCCCGATTC TCCCTTCTGCCGGGAAGCATTACCCGTTTCTTTTTACTATTGATCATAGTGTTGCTGGTGACGATGGGCGTGATGGTGCA GAGCGCTGTAAACGCCTGGCTCAAAGATAAAAGTTATCAAATTGTTGATATCACCCATGCTATTCAGAAGCGAGTAGATA CCTGGCGGTATGTTACCTGGCAGATTTATGACAGCATTGCTGCAACAACTACCCCTTCCGGTGGTGAAGGTTTACAGGAA ACTCGGTTAAAACAAGATGTTTATTACCTGGAGAAGCCTCGGCGTAAAACCGAAGCCCTGATCTTTGGTTCTCATGACAG CGCAACTTTAGAGATGACCCAAAGGATGTCGACTTATCTCGACACGCTATGGGGTGCTGAAAACGTGCCGTGGTCGATGT ACTATCTTAACGGCCAGGATAACAGTCTGATTTTGATCTCAACGTTACCACTTAAAGATCTCTCTTCCGGTTTTAAAGAA TCAACGATTGATAGCATTGTCGATTCGCGTCGCGCCGAAATGCTTCAACAAGCGAACGCCCTCGACGAACGTGAAAGCTT TTCTGCTTTACGCCATTTGACCTGGCAGAACGGTCATTACTTTACTTTGCGAACCACTTTCAATCAGCCTGGGCATCTGG CAACAGTAGTGGCTTTCGATTTACCCATCAATGATTTAATTCCCCCAGGAATGCCACTGGACAGTTTCCGCCTGGAACCT GATGTGACCTCCACGGGGGCAACCACCAATGATAAAGACACTCCCGATAGCGTCAGCATCAGTTTTAACAGTTCCAAAAT CGAAATCTCCTCGGCATTAAATTCCACCGATATGCGTCTGGTGTGGCAGGTTCCTTATGGCACGTTGCTGCTTGATACCC TGCAAAATATATTTTTGCCGCTGCTTTTGAATATTGGTCTGTTGGCGCTGGCCGTTTTTGGATTCACCACTTTTCGTCAC TATGCCGGGAAAAGTGGTGAAACCACGCCTTCTCCGGTAATGAGTAACGAATTGCGTGTCTTACGGGCCCTAAATGAAGA GATTGTTTCTCTGCTACCGTTGGGGCTATTGGTACACGACCAGGAAGCTAATCGTACCTTGATTAGCAACAAAATCGCCG ACCATTTACTGCCTCATTTGAATCTGCAAAATATTACCAGTATGGCGGAACAACATCAGGGGATCATCCAGGCGACAATT AATAATGAACTGTATGAGATCCGTCTGTTCCGTAGCCAGGTCACACCGCATACGCAGATTTTTATTATTCGTGATCAGGA CCGGGAAGTGCTGGTGAATAAAAAACTCAAGCAGGCGCAACGTCTGTATGAGAAGAATCAGCAGGGGCGTGCTGCCTTTA TGAACAATATCGGCAATGCCCTGAAGGAGCCTGTTCGCGCGTTGGCTGAAACTGCAGCGAAAATCGAGACAGCAGAAAGC CAGTTGCTGACGGATCGCGCCGACCAGTTGGTGCGTCTGGTAGACGAAATTCAACTGGCAAATATGCTGGAAAACGACAG CTGGAAAAGTGAATCCGTTCTTTTTTCCGTGCAGGACTTGATCGATGAAGTCGTGCCTGAAGTGCTTCCAGCCATAAAAC GTAAGGGGCTGCAGCTACTGATCAACAATCGCCTGCATGCCAACGACCAACGCAGGGGCGACCGTGATGCTCTGCGGCGT ATTTTGCTGTTATTGATGCAGTATGCGGTGACTTCCACGCAAATTGGTAAAATTACCCTCGAAGTTGATCAAGATGAATC ATCAGAAGAACGCCTCACTTTCCGTATTCTTGATACAGGTGAAGGTGTCACGCTGAGTGAAATTGATAATCTGCATTTCC CGTTTATTAATCAGACACAAAGTGACCGTTATGGCAGTGCAGATCCTCTGACTTTCTGGCTTTGTGATCAGTTGGCTCGC AAATTAGGTGGCCATTTAAATATTAAAGCGCGAGAAGCATTGGGTACACGCTACACCATTCATGTTAAAATGACTCCGCA CGATGAACATATGGAAATAGAAGAACGACTATTGGATGATGTCTGCGTTATGGTAGATGTCACTTCAAACGAAGTTCGTA ACATCGTGCTTAGGCAACTGGAAAACTGGGGTGCTACGTGCATCACTCCAGATGAAAGACTGATAAGTCAAGAATATGAT CTCTTTTTAACTGATAATCCGTCTAATCTTACATCCTCAGGCGTGCTTTTAAGCGATGATGAGTCTGGCGTACGAAAAAT TGGCCCCGGTCAACTACGCGTCAACTTTAATATGAGCAACGCTATGCAGGAGGCTGTTCTACAACTTATTGAAGAGCAAC TGGCGCAGGAAGATATTCCAGAGTCGCCACTCGGCGGGGATGAGAATGCCGAACTTCATGCCAGTGGCTACTATTCGCTC TTTGTAGACACAGTACCGGATGATGTTAAGAGGTTGTATACTGAGGCAGCAGTCAGTGATTTTGCTGCGCTGGCTCAAAC GGCTCATCGTCTGAAAGGCGTGTTTGCCATGCTAAATCTGGTACCCGGCAAGCAGTTATGTGAAACGCTGGAACATCTCA TTCGTGAAAAAGATGCTCCAGGTATAGAAAAATACATCAGCGACATTGACTCTTATGTCAAGAGCTTGCTGTAG
Upstream 100 bases:
>100_bases CTTTACACATAATTTTCCCGCATATGCTACCCCTGCAAAACTGTTACAGTTATTAACTATTTCGCAATATGTCACGAATG TTAAAACTAATTAATAATTC
Downstream 100 bases:
>100_bases CAAGGTAGCCTAATACATGAACAATATGAACGTTATTATTGCCGATGACCATCCGATTGTACTGTTCGGTATTCGCAAAT CACTTGAGCAGATCGAGTGG
Product: phosphotransfer intermediate protein in two-component regulatory system with RcsBC
Products: NA
Alternate protein names: Phosphotransfer intermediate RcsD [H]
Number of amino acids: Translated: 957; Mature: 957
Protein sequence:
>957_residues MLFSYIFLFVLFFICTPERNLYISPSQGSSLILLINITPVVFRGCGNSSHSLYTAFHFYDVFNRSPTPMSQSDTTATSRF SLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDTWRYVTWQIYDSIAATTTPSGGEGLQE TRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKE STIDSIVDSRRAEMLQQANALDERESFSALRHLTWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEP DVTSTGATTNDKDTPDSVSISFNSSKIEISSALNSTDMRLVWQVPYGTLLLDTLQNIFLPLLLNIGLLALAVFGFTTFRH YAGKSGETTPSPVMSNELRVLRALNEEIVSLLPLGLLVHDQEANRTLISNKIADHLLPHLNLQNITSMAEQHQGIIQATI NNELYEIRLFRSQVTPHTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMNNIGNALKEPVRALAETAAKIETAES QLLTDRADQLVRLVDEIQLANMLENDSWKSESVLFSVQDLIDEVVPEVLPAIKRKGLQLLINNRLHANDQRRGDRDALRR ILLLLMQYAVTSTQIGKITLEVDQDESSEERLTFRILDTGEGVTLSEIDNLHFPFINQTQSDRYGSADPLTFWLCDQLAR KLGGHLNIKAREALGTRYTIHVKMTPHDEHMEIEERLLDDVCVMVDVTSNEVRNIVLRQLENWGATCITPDERLISQEYD LFLTDNPSNLTSSGVLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEDIPESPLGGDENAELHASGYYSL FVDTVPDDVKRLYTEAAVSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDAPGIEKYISDIDSYVKSLL
Sequences:
>Translated_957_residues MLFSYIFLFVLFFICTPERNLYISPSQGSSLILLINITPVVFRGCGNSSHSLYTAFHFYDVFNRSPTPMSQSDTTATSRF SLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDTWRYVTWQIYDSIAATTTPSGGEGLQE TRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKE STIDSIVDSRRAEMLQQANALDERESFSALRHLTWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEP DVTSTGATTNDKDTPDSVSISFNSSKIEISSALNSTDMRLVWQVPYGTLLLDTLQNIFLPLLLNIGLLALAVFGFTTFRH YAGKSGETTPSPVMSNELRVLRALNEEIVSLLPLGLLVHDQEANRTLISNKIADHLLPHLNLQNITSMAEQHQGIIQATI NNELYEIRLFRSQVTPHTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMNNIGNALKEPVRALAETAAKIETAES QLLTDRADQLVRLVDEIQLANMLENDSWKSESVLFSVQDLIDEVVPEVLPAIKRKGLQLLINNRLHANDQRRGDRDALRR ILLLLMQYAVTSTQIGKITLEVDQDESSEERLTFRILDTGEGVTLSEIDNLHFPFINQTQSDRYGSADPLTFWLCDQLAR KLGGHLNIKAREALGTRYTIHVKMTPHDEHMEIEERLLDDVCVMVDVTSNEVRNIVLRQLENWGATCITPDERLISQEYD LFLTDNPSNLTSSGVLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEDIPESPLGGDENAELHASGYYSL FVDTVPDDVKRLYTEAAVSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDAPGIEKYISDIDSYVKSLL >Mature_957_residues MLFSYIFLFVLFFICTPERNLYISPSQGSSLILLINITPVVFRGCGNSSHSLYTAFHFYDVFNRSPTPMSQSDTTATSRF SLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDTWRYVTWQIYDSIAATTTPSGGEGLQE TRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKE STIDSIVDSRRAEMLQQANALDERESFSALRHLTWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEP DVTSTGATTNDKDTPDSVSISFNSSKIEISSALNSTDMRLVWQVPYGTLLLDTLQNIFLPLLLNIGLLALAVFGFTTFRH YAGKSGETTPSPVMSNELRVLRALNEEIVSLLPLGLLVHDQEANRTLISNKIADHLLPHLNLQNITSMAEQHQGIIQATI NNELYEIRLFRSQVTPHTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMNNIGNALKEPVRALAETAAKIETAES QLLTDRADQLVRLVDEIQLANMLENDSWKSESVLFSVQDLIDEVVPEVLPAIKRKGLQLLINNRLHANDQRRGDRDALRR ILLLLMQYAVTSTQIGKITLEVDQDESSEERLTFRILDTGEGVTLSEIDNLHFPFINQTQSDRYGSADPLTFWLCDQLAR KLGGHLNIKAREALGTRYTIHVKMTPHDEHMEIEERLLDDVCVMVDVTSNEVRNIVLRQLENWGATCITPDERLISQEYD LFLTDNPSNLTSSGVLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEDIPESPLGGDENAELHASGYYSL FVDTVPDDVKRLYTEAAVSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDAPGIEKYISDIDSYVKSLL
Specific function: May serves as a phosphotransfer intermediate between RcsC and RcsB. It may acquire a phosphoryl group at His-842 from RcsC 'Asp-866' and transmit it to 'Asp-56' of RcsB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HPt domain [H]
Homologues:
Organism=Escherichia coli, GI1788545, Length=890, Percent_Identity=86.7415730337079, Blast_Score=1533, Evalue=0.0, Organism=Escherichia coli, GI145693157, Length=409, Percent_Identity=22.7383863080685, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008207 - InterPro: IPR005467 [H]
Pfam domain/function: PF02518 HATPase_c; PF01627 Hpt [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 107883; Mature: 107883
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS50894 HPT ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFSYIFLFVLFFICTPERNLYISPSQGSSLILLINITPVVFRGCGNSSHSLYTAFHFYD CHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCHHHEECCCCCCCCHHHHHHHHH VFNRSPTPMSQSDTTATSRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQ HHCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IVDITHAIQKRVDTWRYVTWQIYDSIAATTTPSGGEGLQETRLKQDVYYLEKPRRKTEAL EEEHHHHHHHHHHHHHEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE IFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKE EECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCHHHHHCCHHH STIDSIVDSRRAEMLQQANALDERESFSALRHLTWQNGHYFTLRTTFNQPGHLATVVAFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEEEE LPINDLIPPGMPLDSFRLEPDVTSTGATTNDKDTPDSVSISFNSSKIEISSALNSTDMRL CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHCCCCCCEE VWQVPYGTLLLDTLQNIFLPLLLNIGLLALAVFGFTTFRHYAGKSGETTPSPVMSNELRV EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LRALNEEIVSLLPLGLLVHDQEANRTLISNKIADHLLPHLNLQNITSMAEQHQGIIQATI HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEC NNELYEIRLFRSQVTPHTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMNNIGNA CCCEEEEEEEHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKEPVRALAETAAKIETAESQLLTDRADQLVRLVDEIQLANMLENDSWKSESVLFSVQDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH IDEVVPEVLPAIKRKGLQLLINNRLHANDQRRGDRDALRRILLLLMQYAVTSTQIGKITL HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE EVDQDESSEERLTFRILDTGEGVTLSEIDNLHFPFINQTQSDRYGSADPLTFWLCDQLAR EECCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KLGGHLNIKAREALGTRYTIHVKMTPHDEHMEIEERLLDDVCVMVDVTSNEVRNIVLRQL HHCCCEEEEEHHHCCCEEEEEEEECCCCHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH ENWGATCITPDERLISQEYDLFLTDNPSNLTSSGVLLSDDESGVRKIGPGQLRVNFNMSN HHCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHH AMQEAVLQLIEEQLAQEDIPESPLGGDENAELHASGYYSLFVDTVPDDVKRLYTEAAVSD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHH FAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDAPGIEKYISDIDSYVKSLL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC >Mature Secondary Structure MLFSYIFLFVLFFICTPERNLYISPSQGSSLILLINITPVVFRGCGNSSHSLYTAFHFYD CHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCHHHEECCCCCCCCHHHHHHHHH VFNRSPTPMSQSDTTATSRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQ HHCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IVDITHAIQKRVDTWRYVTWQIYDSIAATTTPSGGEGLQETRLKQDVYYLEKPRRKTEAL EEEHHHHHHHHHHHHHEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE IFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKE EECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCHHHHHCCHHH STIDSIVDSRRAEMLQQANALDERESFSALRHLTWQNGHYFTLRTTFNQPGHLATVVAFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEEEE LPINDLIPPGMPLDSFRLEPDVTSTGATTNDKDTPDSVSISFNSSKIEISSALNSTDMRL CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHCCCCCCEE VWQVPYGTLLLDTLQNIFLPLLLNIGLLALAVFGFTTFRHYAGKSGETTPSPVMSNELRV EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LRALNEEIVSLLPLGLLVHDQEANRTLISNKIADHLLPHLNLQNITSMAEQHQGIIQATI HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEC NNELYEIRLFRSQVTPHTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMNNIGNA CCCEEEEEEEHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKEPVRALAETAAKIETAESQLLTDRADQLVRLVDEIQLANMLENDSWKSESVLFSVQDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH IDEVVPEVLPAIKRKGLQLLINNRLHANDQRRGDRDALRRILLLLMQYAVTSTQIGKITL HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE EVDQDESSEERLTFRILDTGEGVTLSEIDNLHFPFINQTQSDRYGSADPLTFWLCDQLAR EECCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KLGGHLNIKAREALGTRYTIHVKMTPHDEHMEIEERLLDDVCVMVDVTSNEVRNIVLRQL HHCCCEEEEEHHHCCCEEEEEEEECCCCHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH ENWGATCITPDERLISQEYDLFLTDNPSNLTSSGVLLSDDESGVRKIGPGQLRVNFNMSN HHCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHH AMQEAVLQLIEEQLAQEDIPESPLGGDENAELHASGYYSLFVDTVPDDVKRLYTEAAVSD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHH FAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDAPGIEKYISDIDSYVKSLL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2404948; 7984428; 11758943; 11309126 [H]