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The map label for this gene is ypdB [H]

Identifier: 218548170

GI number: 218548170

Start: 804569

End: 805303

Strand: Reverse

Name: ypdB [H]

Synonym: EFER_0787

Alternate gene names: 218548170

Gene position: 805303-804569 (Counterclockwise)

Preceding gene: 218548171

Following gene: 218548169

Centisome position: 17.55

GC content: 47.35

Gene sequence:

>735_bases
GTGAAAGTCATCATTGTTGAAGACGAATTCCTGGCACAACAGGAACTGAGCTGGCTAATTAAAGAGCACAGCCAGATGGA
GATTGTCGGCACCTTTGACGACGGTCTGGACGTGTTGAAGTTTTTGCAGCATAACCGCGTCGACGCCATTTTTCTGGATA
TCAATATTCCGTCGCTGGATGGCGTGTTGCTGGCGCAAAACATCAGCCAGTTCGCCCATAAACCGTTTATTGTGTTCATC
ACCGCGTGGAAAGAACATGCGGTAGAAGCGTTTGAACTGGAAGCGTTTGACTACATTCTCAAACCCTATCAGGAGTCACG
CATTACCGGGATGCTGCAAAAACTGGAAGCGGCCTGGCAACAACAGCAGACCAGCAGTACGCCTGCCACGACGGTAACGC
GTGAGAATGACACCATTAATCTGGTGAAAGATGAGCGCATCATCGTCACGCCAATTAACGATATCTATTACGCCGAAGCG
CACGAGAAAATGACCTTTGTCTATACGCGGCGTGAATCCTACGTAATGCCAATGAACATTACTGAATTTTGCAGCAAGCT
GCCGCCGTCACATTTTTTCCGCTGCCATCGCTCATTTTGTGTCAATCTGAACAAAATCCGCGAAATCGAACCGTGGTTTA
ATAACACCTACATTCTGCGACTGAAAGATCTGGATTTTGAAGTGCCGGTCAGCCGTAGCAAAGTAAAAGAATTCAGGCAG
TTAATGCATCTGTAA

Upstream 100 bases:

>100_bases
GCCGCCTGGAACCAGGAACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCTGTCGCCTCACAGGCTACGTTATTG
CTTTGAGCCGGAGTGATATT

Downstream 100 bases:

>100_bases
TCGGGATTTTCATGAAAGCAACAGGCTTGCCCGCCGATCAACAATTTTTCGCCGATCTGTTCAGCGGCCTGGTGCTTAAC
CCGCAACTACTGGGGCGCGT

Product: response regulator in two-component system with YpdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPATTVTRENDTINLVKDERIIVTPINDIYYAEA
HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
LMHL

Sequences:

>Translated_244_residues
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPATTVTRENDTINLVKDERIIVTPINDIYYAEA
HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
LMHL
>Mature_244_residues
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPATTVTRENDTINLVKDERIIVTPINDIYYAEA
HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
LMHL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=244, Percent_Identity=99.5901639344262, Blast_Score=506, Evalue=1e-145,
Organism=Escherichia coli, GI87082052, Length=250, Percent_Identity=32.4, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28751; Mature: 28751

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLD
CEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCC
GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQ
CHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QQQTSSTPATTVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNI
HHHCCCCCCEEEEECCCEEEEEECCEEEEEECCCEEEECCCCEEEEEEEECCCEEECCCH
TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
HHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEECCCCHHHHHHHHH
LMHL
HHCC
>Mature Secondary Structure
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLD
CEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCC
GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQ
CHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QQQTSSTPATTVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNI
HHHCCCCCCEEEEECCCEEEEEECCEEEEEECCCEEEECCCCEEEEEEEECCCEEECCCH
TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
HHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEECCCCHHHHHHHHH
LMHL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]