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The map label for this gene is pdaB [H]

Identifier: 218235681

GI number: 218235681

Start: 149886

End: 150650

Strand: Reverse

Name: pdaB [H]

Synonym: BCB4264_A0172

Alternate gene names: 218235681

Gene position: 150650-149886 (Counterclockwise)

Preceding gene: 218231690

Following gene: 218235173

Centisome position: 2.78

GC content: 36.73

Gene sequence:

>765_bases
ATGTTTTTCTTTTTTATTACGAGTAAGAGAAATTTTAAACACATTAGCTTAATAGTGATACTGTCCTTATTTACAGCATG
GCTACTCTTTTTAAAAACATATTCACATGAATCTGCTTTTTCCACTGCTACAGGCCCTAAAGTAATTTACAAAGGAGACA
CCGCTAAAAAGCAAGTTGCATTTACGTTTGATATTAGTTGGGGAGACAAAAAAGCAATTCCAATCCTAGATACTCTTAAA
GAAAAAGAAATTAAGAATGCAACCTTCTTCCTTTCTGCTGCATGGGCCGAAAGACACCCCGATATTGTAGAGCGAATCAT
GAAAGATGGACACGAAATCGGTAGTATGGGGTACAATTACACATCCTATACTTCTCTAGAGACAAATGAAATAAGACGAG
ACCTTTTACGAGCACAAGATGTTTTTACGAAACTTGGTGTAAAACAAGTCAAGCTGTTACGTCCACCTAGTGGCGAATTT
AACAAAGCAACCCTTAAAATCGCAGAATCACTTGGATACACCGTCGTGCATTGGAGTAATAATTCAAACGATTGGAAAAA
CCCAGGTGTAAATAACATCGTTTCCACTGTCTCTAATAATTTGAAAGGTGGAGATATCGTCTTATTACACGCATCCGATT
CTGCCCTTCAAACAAATAGAGCTTTACCGCTACTCCTGCAAAAAATAAAAAGTGATGGATATGAGCAAATATCCGTTTCA
CAACTTATTTCCAACACAAGTACGAAAAGTGAAGATGTGAAGTAG

Upstream 100 bases:

>100_bases
TCCATTATATCCACTACTTACGATATTAATCCTTTGTTCTCTTTTTTATATTTCCAGCATATATGTAACTGAAAAGGATT
GGACAAAGGGGCGTAATATT

Downstream 100 bases:

>100_bases
TTTCTTCCCTACTACTCTTCACGCATAAAAAGCTCTACTACCTTTCAAGAAGGTGGTAGAGCTTTTTTAATCATACCATT
TACAACATTATAACTGCTGT

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTAKKQVAFTFDISWGDKKAIPILDTLK
EKEIKNATFFLSAAWAERHPDIVERIMKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQVKLLRPPSGEF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNNIVSTVSNNLKGGDIVLLHASDSALQTNRALPLLLQKIKSDGYEQISVS
QLISNTSTKSEDVK

Sequences:

>Translated_254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTAKKQVAFTFDISWGDKKAIPILDTLK
EKEIKNATFFLSAAWAERHPDIVERIMKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQVKLLRPPSGEF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNNIVSTVSNNLKGGDIVLLHASDSALQTNRALPLLLQKIKSDGYEQISVS
QLISNTSTKSEDVK
>Mature_254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTAKKQVAFTFDISWGDKKAIPILDTLK
EKEIKNATFFLSAAWAERHPDIVERIMKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQVKLLRPPSGEF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNNIVSTVSNNLKGGDIVLLHASDSALQTNRALPLLLQKIKSDGYEQISVS
QLISNTSTKSEDVK

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28584; Mature: 28584

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTAKKQVA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECCCCCEEEE
FTFDISWGDKKAIPILDTLKEKEIKNATFFLSAAWAERHPDIVERIMKDGHEIGSMGYNY
EEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHCCHHHHCCCCCC
TSYTSLETNEIRRDLLRAQDVFTKLGVKQVKLLRPPSGEFNKATLKIAESLGYTVVHWSN
CEECCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEECC
NSNDWKNPGVNNIVSTVSNNLKGGDIVLLHASDSALQTNRALPLLLQKIKSDGYEQISVS
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCCCHHHHH
QLISNTSTKSEDVK
HHHHCCCCCCCCCC
>Mature Secondary Structure
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTAKKQVA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECCCCCEEEE
FTFDISWGDKKAIPILDTLKEKEIKNATFFLSAAWAERHPDIVERIMKDGHEIGSMGYNY
EEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHCCHHHHCCCCCC
TSYTSLETNEIRRDLLRAQDVFTKLGVKQVKLLRPPSGEFNKATLKIAESLGYTVVHWSN
CEECCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEECC
NSNDWKNPGVNNIVSTVSNNLKGGDIVLLHASDSALQTNRALPLLLQKIKSDGYEQISVS
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCCCHHHHH
QLISNTSTKSEDVK
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]